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6
votes
3
replies
4.3k
views
Which is the proper RNA-seq count table transformation to perform hierarchial clustering analysis?
RNA-Seq stats clustering
updated 5.2 years ago by 4.2k • written 5.2 years ago by 3.4k
1
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0
replies
2.0k
views
Answer: A: How to include samples names in assignTaxonomy of DADA2
5.2 years ago by antonioggsousa 3.4k
0
votes
0
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2.6k
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Answer: A: Python script for ATGC count
5.2 years ago by antonioggsousa 3.4k
0
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0
replies
1.5k
views
Comment: C: how to make bar plot sorted by both -log(p.adjust value) and ontology classifica
5.2 years ago by antonioggsousa 3.4k
0
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0
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2.6k
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Comment: C: Python script for ATGC count
5.2 years ago by antonioggsousa 3.4k
0
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1
reply
2.4k
views
Comment: C: Decontam data import (phyloseq?)
5.2 years ago by antonioggsousa 3.4k
1
vote
0
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1.6k
views
Comment: C: New to NGS
5.2 years ago by antonioggsousa 3.4k
1
vote
0
replies
13k
views
Answer: C: Run Fastqc from terminal
5.2 years ago by antonioggsousa 3.4k
1
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1
reply
4.1k
views
Answer: A: Warning messages: gene set enrichment analysis with clusterProfiler
5.2 years ago by antonioggsousa 3.4k
1
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0
replies
2.7k
views
Comment: C: Changing colour of dots group wise
5.2 years ago by antonioggsousa 3.4k
1
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1
reply
2.7k
views
Comment: C: Changing colour of dots group wise
5.2 years ago by antonioggsousa 3.4k
2
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0
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2.7k
views
Answer: A: How I produce such a plot in R
5.2 years ago by antonioggsousa 3.4k
0
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0
replies
2.7k
views
Comment: C: heatmap for TCGA kirk data
5.2 years ago by antonioggsousa 3.4k
0
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1
reply
2.7k
views
Comment: C: heatmap for TCGA kirk data
5.2 years ago by antonioggsousa 3.4k
0
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1
reply
2.2k
views
Comment: C: ScatterPlot with CummeRbund
5.2 years ago by antonioggsousa 3.4k
0
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1
reply
2.7k
views
Comment: C: heatmap for TCGA kirk data
5.2 years ago by antonioggsousa 3.4k
0
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1
reply
2.2k
views
Comment: C: ScatterPlot with CummeRbund
5.2 years ago by antonioggsousa 3.4k
0
votes
0
replies
1.5k
views
Comment: C: Translate nucleotide sequence into AA sequence before BLAST?
5.2 years ago by antonioggsousa 3.4k
0
votes
2
replies
1.5k
views
Answer: A: Translate nucleotide sequence into AA sequence before BLAST?
5.2 years ago by antonioggsousa 3.4k
0
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1
reply
2.2k
views
Comment: C: ScatterPlot with CummeRbund
5.2 years ago by antonioggsousa 3.4k
0
votes
1
reply
2.2k
views
Comment: C: ScatterPlot with CummeRbund
5.2 years ago by antonioggsousa 3.4k
0
votes
0
replies
1.3k
views
Answer: A: Understanding the textual output file of FastQC - Per Base N Content
5.2 years ago by antonioggsousa 3.4k
0
votes
1
reply
2.0k
views
Comment: C: Nest 2 for loops in a single command line
5.3 years ago by antonioggsousa 3.4k
0
votes
0
replies
1.9k
views
Comment: C: Which is the best approach to get DEG across one condition, in a three-factor de
5.3 years ago by antonioggsousa 3.4k
7
votes
2
replies
1.9k
views
Which is the best approach to get DEG across one condition, in a three-factor design experiment?
RNA-Seq edgeR
updated 5.3 years ago by 105k • written 5.3 years ago by 3.4k
1
vote
1
reply
11k
views
Comment: C: How can I remove the outliers from a boxplot and fill the groups?
5.3 years ago by antonioggsousa 3.4k
1
vote
0
replies
9.4k
views
Comment: C: METAPHLAN: Relative abundance to read count
5.3 years ago by antonioggsousa 3.4k
0
votes
1
reply
1.9k
views
Comment: C: Check programmaticaly if a protein is mitochondrial with annotations
5.3 years ago by antonioggsousa 3.4k
2
votes
2
replies
11k
views
Answer: A: How can I remove the outliers from a boxplot and fill the groups?
5.3 years ago by antonioggsousa 3.4k
0
votes
1
reply
9.4k
views
Comment: C: METAPHLAN: Relative abundance to read count
5.3 years ago by antonioggsousa 3.4k
0
votes
0
replies
3.9k
views
Comment: C: How to extract out specific distances from a distance matrix?
5.3 years ago by antonioggsousa 3.4k
0
votes
0
replies
1.5k
views
Comment: C: Recommendations for software for power analysis of paired sample experiment for
5.3 years ago by antonioggsousa 3.4k
0
votes
1
reply
1.5k
views
Comment: C: Recommendations for software for power analysis of paired sample experiment for
5.3 years ago by antonioggsousa 3.4k
1
vote
3
replies
3.9k
views
Comment: C: How to extract out specific distances from a distance matrix?
5.3 years ago by antonioggsousa 3.4k
0
votes
1
reply
2.8k
views
Answer: A: Can I use pseudocounts for differential abundance of OTUs?
5.3 years ago by antonioggsousa 3.4k
1
vote
1
reply
3.9k
views
Answer: A: How to extract out specific distances from a distance matrix?
5.3 years ago by antonioggsousa 3.4k
0
votes
1
reply
10k
views
Comment: C: How to generate Beta diversity boxplot from phyloseq object?
5.3 years ago by antonioggsousa 3.4k
0
votes
1
reply
10k
views
Comment: C: How to generate Beta diversity boxplot from phyloseq object?
5.3 years ago by antonioggsousa 3.4k
2
votes
0
replies
10k
views
Comment: C: How to generate Beta diversity boxplot from phyloseq object?
5.3 years ago by antonioggsousa 3.4k
2
votes
2
replies
10k
views
Comment: C: How to generate Beta diversity boxplot from phyloseq object?
5.3 years ago by antonioggsousa 3.4k
3
votes
0
replies
26k
views
Answer: A: mitochondrial/ribosomal protein genes in scRNA-seq analysis
5.3 years ago by antonioggsousa 3.4k
1
vote
1
reply
10k
views
Comment: C: How to generate Beta diversity boxplot from phyloseq object?
5.3 years ago by antonioggsousa 3.4k
0
votes
0
replies
2.3k
views
Comment: C: looping through PE files ?
5.3 years ago by antonioggsousa 3.4k
3
votes
1
reply
2.3k
views
Answer: A: looping through PE files ?
5.3 years ago by antonioggsousa 3.4k
0
votes
1
reply
10k
views
Comment: C: How to generate Beta diversity boxplot from phyloseq object?
5.3 years ago by antonioggsousa 3.4k
2
votes
1
reply
10k
views
Comment: C: How to generate Beta diversity boxplot from phyloseq object?
5.3 years ago by antonioggsousa 3.4k
1
vote
1
reply
2.3k
views
Comment: C: looping through PE files ?
5.3 years ago by antonioggsousa 3.4k
0
votes
1
reply
1.3k
views
Comment: C: which software or tool can be used for identifying alternative splicing events b
5.3 years ago by antonioggsousa 3.4k
1
vote
1
reply
10k
views
Comment: C: How to generate Beta diversity boxplot from phyloseq object?
5.3 years ago by antonioggsousa 3.4k
1
vote
1
reply
10k
views
Comment: C: How to generate Beta diversity boxplot from phyloseq object?
5.3 years ago by antonioggsousa 3.4k
424 results • Page 6 of 9
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