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Comment: Comment: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
25 days ago by John Marshall 3.0k
0
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0
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1.3k
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Comment: Comment: sam format in the emboss water program
6 months ago by John Marshall 3.0k
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1
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1.3k
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Comment: Comment: sam format in the emboss water program
6 months ago by John Marshall 3.0k
2
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1
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1.3k
views
Comment: Comment: sam format in the emboss water program
6 months ago by John Marshall 3.0k
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0
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1.5k
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Comment: Comment: Read block operation failed with BAM file
7 months ago by John Marshall 3.0k
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0
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1.5k
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Comment: Comment: Read block operation failed with BAM file
7 months ago by John Marshall 3.0k
2
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0
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1.3k
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Comment: Comment: samtools install error
12 months ago by John Marshall 3.0k
0
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0
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2.6k
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Comment: Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
21 months ago by John Marshall 3.0k
0
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0
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2.6k
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Comment: Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
21 months ago by John Marshall 3.0k
0
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1
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2.6k
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Comment: Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
21 months ago by John Marshall 3.0k
2
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1
reply
2.6k
views
Comment: Comment: bwa 0.7.18 download to fix compile fail with GCC 10
24 months ago by John Marshall 3.0k
0
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0
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1.4k
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Comment: Comment: Weird behavior of `--max-depth` argument from `bcftools mpileup` command when it
2.1 years ago by John Marshall 3.0k
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0
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2.2k
views
Comment: Comment: I wonder if someone please explain what secondary, supplementary, duplicates and
2.1 years ago by John Marshall 3.0k
2
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2
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1.2k
views
Comment: Comment: Convert SAM to BAM error
2.2 years ago by John Marshall 3.0k
0
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1
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2.6k
views
Comment: Comment: samtools view not removing unwanted headers
2.5 years ago by John Marshall 3.0k
4
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2
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34k
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Comment: Comment: bcftools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open
2.5 years ago by John Marshall 3.0k
0
votes
2
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2.1k
views
Comment: Comment: Exec format error in unmapped bam file
2.6 years ago by John Marshall 3.0k
1
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1
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2.2k
views
Comment: Comment: Fasta.fai file error
2.6 years ago by John Marshall 3.0k
1
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0
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2.2k
views
Comment: Comment: Fasta.fai file error
2.6 years ago by John Marshall 3.0k
2
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1
reply
9.2k
views
Comment: Comment: Dual index barcode demultiplex issue
2.7 years ago by John Marshall 3.0k
0
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0
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4.0k
views
Comment: Comment: Probable bug in bcftools while parsing headers
2.7 years ago by John Marshall 3.0k
0
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0
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8.2k
views
Comment: C: samtools addreplacerg gives error
3.1 years ago by John Marshall 3.0k
0
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1
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1.4k
views
Comment: C: Samtools Faidx Error Message
3.3 years ago by John Marshall 3.0k
0
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1
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1.4k
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Comment: C: Samtools Faidx Error Message
3.3 years ago by John Marshall 3.0k
0
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0
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3.2k
views
Comment: C: How to fix minimap2 -> samtools sort error (samtools sort: truncated file. Abort
3.3 years ago by John Marshall 3.0k
1
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0
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1.3k
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Comment: C: Bcftools filter error
3.6 years ago by John Marshall 3.0k
1
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0
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1.6k
views
Comment: C: Does bai file contain chromosome names and their lengths?
3.7 years ago by John Marshall 3.0k
0
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1
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1.6k
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Comment: C: BWA mem paired end read name errors
3.8 years ago by John Marshall 3.0k
1
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0
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1.4k
views
Comment: C: Does BWA MEM understand paired-end suffixes? /2 in a single FASTQ file?
3.8 years ago by John Marshall 3.0k
1
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0
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965
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Comment: C: BAM file output
4.2 years ago by John Marshall 3.0k
0
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0
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4.0k
views
Comment: C: samtools mpileup memory leakage
updated 4.3 years ago by 43k • written 8.3 years ago by 3.0k
0
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0
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2.4k
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Comment: C: ERROR:SAM to BAM using samtools
4.4 years ago by John Marshall 3.0k
1
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1
reply
6.7k
views
Comment: C: Please help me with samtools
updated 4.4 years ago by 43k • written 8.5 years ago by 3.0k
0
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1
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3.6k
views
Comment: C: Pb to Compile Pindel on MacOs x
updated 4.5 years ago by 43k • written 8.9 years ago by 3.0k
0
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0
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2.6k
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Comment: C: Samtools/htslib v1.2 released
updated 4.5 years ago by 43k • written 9.2 years ago by 3.0k
0
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1
reply
13k
views
Comment: C: Error Installing Samtools Library On Linux (Centos 6)
updated 4.6 years ago by 43k • written 10.6 years ago by 3.0k
0
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0
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6.3k
views
Comment: C: Samtools Api: Sequence And Quality Are Inconsistent
updated 4.6 years ago by 43k • written 10.9 years ago by 3.0k
1
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0
replies
2.5k
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Comment: C: structural variants in gnomad and the VCF spec. Why is tabix/bcftools failing ?
4.8 years ago by John Marshall 3.0k
1
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1
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2.5k
views
Comment: C: structural variants in gnomad and the VCF spec. Why is tabix/bcftools failing ?
4.8 years ago by John Marshall 3.0k
1
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0
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999
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Comment: C: VCF INFO interpretation
4.9 years ago by John Marshall 3.0k
1
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1
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2.2k
views
Comment: C: how to compute the insert size in SAM file
5.0 years ago by John Marshall 3.0k
0
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1
reply
4.6k
views
Comment: C: install Primer3 on Ubuntu
5.3 years ago by John Marshall 3.0k
1
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0
replies
4.6k
views
Comment: C: install Primer3 on Ubuntu
5.3 years ago by John Marshall 3.0k
1
vote
1
reply
4.5k
views
Comment: C: Review of the CIGAR string format
5.5 years ago by John Marshall 3.0k
1
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0
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1.7k
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Comment: C: Can I read chrom, strand, pos, len from bam files without htslib?
5.5 years ago by John Marshall 3.0k
0
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0
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2.2k
views
Comment: C: Is there a single header file somewhere I can use to read bam?
updated 5.5 years ago by 161k • written 5.5 years ago by 3.0k
3
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1
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2.2k
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Comment: C: Is there a single header file somewhere I can use to read bam?
5.5 years ago by John Marshall 3.0k
0
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1
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3.7k
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Comment: C: Bedtools intersect alternatives available
5.5 years ago by John Marshall 3.0k
0
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0
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4.3k
views
Comment: C: Install vcf2bed plugin for bcftools
5.5 years ago by John Marshall 3.0k
1
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1
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4.0k
views
Comment: C: Probable bug in bcftools while parsing headers
5.6 years ago by John Marshall 3.0k
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