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3
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Answer: Answer: Seurat - Warning after rescaling a subset of the data
4 days ago by Bastien Hervé 6.5k
1
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9.7k
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Comment: Comment: Regarding the usage of raw vs filtered bc matrices
4 days ago by Bastien Hervé 6.5k
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Answer: Answer: DotPlot / VlnPlot Seurat
4 days ago by Bastien Hervé 6.5k
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6.9k
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Comment: Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
11 days ago by Bastien Hervé 6.5k
1
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6.9k
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Comment: Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
11 days ago by Bastien Hervé 6.5k
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1
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1.2k
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Answer: Answer: What is the best practice for scRNAseq analysis of multiple samples?
4 weeks ago by Bastien Hervé 6.5k
0
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1
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531
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Answer: Answer: Two config files for one Snakemake file
8 weeks ago by Bastien Hervé 6.5k
0
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1
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1.1k
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Comment: Comment: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
8 weeks ago by Bastien Hervé 6.5k
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1.1k
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Comment: Comment: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
8 weeks ago by Bastien Hervé 6.5k
0
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1
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1.1k
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Comment: Comment: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
8 weeks ago by Bastien Hervé 6.5k
2
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688
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Answer: Answer: Seurat dims and QC questions
11 weeks ago by Bastien Hervé 6.5k
0
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1
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597
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Comment: Comment: Trajectory Analysis scRNA-seq with one cell type and two developmental stages
12 weeks ago by Bastien Hervé 6.5k
0
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1
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597
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Comment: Comment: Trajectory Analysis scRNA-seq with one cell type and two developmental stages
12 weeks ago by Bastien Hervé 6.5k
0
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1
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828
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Answer: Answer: Issue in circular heatmap, the rows value are getting interchanged.
3 months ago by Bastien Hervé 6.5k
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0
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1.4k
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Comment: Comment: Anyone familiar with studies on computational neuroscience focused on consciousn
3 months ago by Bastien Hervé 6.5k
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1.1k
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Comment: Comment: Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
3 months ago by Bastien Hervé 6.5k
1
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2.3k
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Comment: Comment: STAR aligner problem on local laptop
3 months ago by Bastien Hervé 6.5k
2
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513
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Answer: Answer: Integration of NanoString CosMx FOVs
4 months ago by Bastien Hervé 6.5k
3
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1.0k
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Answer: Answer: Pie Charts: to use or not to use
4 months ago by Bastien Hervé 6.5k
1
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1
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911
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Comment: Comment: Single cell expression and accessibility integration using cellxgene data
4 months ago by Bastien Hervé 6.5k
2
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0
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569
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Answer: Answer: Regressing variables for finding Differentially expressed genes
4 months ago by Bastien Hervé 6.5k
0
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1
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911
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Comment: Comment: Single cell expression and accessibility integration using cellxgene data
4 months ago by Bastien Hervé 6.5k
2
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0
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979
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Answer: Answer: GSEA and Cytoscape Enrichment maps
4 months ago by Bastien Hervé 6.5k
2
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1
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1.2k
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Comment: Comment: Circular heatmap using circos.heatmap in R
4 months ago by Bastien Hervé 6.5k
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1
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1.2k
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Comment: Comment: Circular heatmap using circos.heatmap in R
4 months ago by Bastien Hervé 6.5k
3
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1
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1.2k
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Answer: Answer: Circular heatmap using circos.heatmap in R
4 months ago by Bastien Hervé 6.5k
0
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0
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1000
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Comment: Comment: Ggplot make boxplots more wide
4 months ago by Bastien Hervé 6.5k
1
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1
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1000
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Comment: Comment: Ggplot make boxplots more wide
4 months ago by Bastien Hervé 6.5k
0
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0
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545
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Comment: Comment: Accessible color palettes for charts and dataviz
4 months ago by Bastien Hervé 6.5k
0
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1
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1.1k
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Comment: Comment: Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
4 months ago by Bastien Hervé 6.5k
0
votes
1
reply
1.1k
views
Answer: Answer: Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
4 months ago by Bastien Hervé 6.5k
1
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2
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758
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Comment: Comment: Different number of fragments after doublets removal in each run
5 months ago by Bastien Hervé 6.5k
0
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1
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642
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Comment: Comment: DEG analysys using pseudobulk from single cell RNA-seq
5 months ago by Bastien Hervé 6.5k
0
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0
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646
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Comment: Comment: Assign different color in same section of Chord diagram in R
5 months ago by Bastien Hervé 6.5k
0
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1
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646
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Comment: Comment: Assign different color in same section of Chord diagram in R
5 months ago by Bastien Hervé 6.5k
0
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0
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2.4k
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Comment: Comment: How to introduce normalized and scaled seurat data into monocle 3?
5 months ago by Bastien Hervé 6.5k
1
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1
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2.0k
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Comment: Comment: Reproducibility Crisis
5 months ago by Bastien Hervé 6.5k
1
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3
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2.0k
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Comment: Comment: Reproducibility Crisis
5 months ago by Bastien Hervé 6.5k
1
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1
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2.0k
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Comment: Comment: Reproducibility Crisis
5 months ago by Bastien Hervé 6.5k
0
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0
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1.3k
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Comment: Comment: Tool for automatic immune cell annotation in MOUSE?
6 months ago by Bastien Hervé 6.5k
0
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0
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590
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Comment: Comment: Understanding sctransform
6 months ago by Bastien Hervé 6.5k
1
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1
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593
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Comment: Comment: single cell compositional analysis - how adjusting for covariates (age)
6 months ago by Bastien Hervé 6.5k
1
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1
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626
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Comment: Comment: PLINK 1.07 Segmentation fault (core dumped)
6 months ago by Bastien Hervé 6.5k
0
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1
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761
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Comment: Comment: Difference in reads per cell between samples
6 months ago by Bastien Hervé 6.5k
0
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1
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761
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Answer: Answer: Difference in reads per cell between samples
6 months ago by Bastien Hervé 6.5k
0
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0
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490
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Comment: Comment: Assistance Required: Error with MuSiC2 Package - "pVar" Function Not Found
6 months ago by Bastien Hervé 6.5k
0
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0
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643
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Comment: Comment: What is indicated by the red dotted lines in the `tiny_10x_pbmc.pdf` out put fro
7 months ago by Bastien Hervé 6.5k
0
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0
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965
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Answer: Answer: Multiple fail points in fastqc file
7 months ago by Bastien Hervé 6.5k
0
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0
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17k
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Comment: Comment: The Biostar Herald for Monday, February 10, 2025
7 months ago by Bastien Hervé 6.5k
0
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0
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512
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Answer: Answer: How to obtain spliced and unspliced counts from parse biosciences generated coun
7 months ago by Bastien Hervé 6.5k
979 results • Page 1 of 20
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