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Comment: Comment: lollipop plot showing DNA sequence
2 days ago by Bastien Hervé 6.5k
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Answer: Answer: Seurat - Warning after rescaling a subset of the data
7 weeks ago by Bastien Hervé 6.5k
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Comment: Comment: Regarding the usage of raw vs filtered bc matrices
7 weeks ago by Bastien Hervé 6.5k
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6.0k
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Answer: Answer: DotPlot / VlnPlot Seurat
7 weeks ago by Bastien Hervé 6.5k
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7.3k
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Comment: Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
8 weeks ago by Bastien Hervé 6.5k
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7.3k
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Comment: Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
8 weeks ago by Bastien Hervé 6.5k
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1.4k
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Answer: Answer: What is the best practice for scRNAseq analysis of multiple samples?
11 weeks ago by Bastien Hervé 6.5k
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639
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Answer: Answer: Two config files for one Snakemake file
3 months ago by Bastien Hervé 6.5k
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1
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1.5k
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Comment: Comment: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
3 months ago by Bastien Hervé 6.5k
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1.5k
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Comment: Comment: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
3 months ago by Bastien Hervé 6.5k
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1.5k
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Comment: Comment: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
3 months ago by Bastien Hervé 6.5k
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798
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Answer: Answer: Seurat dims and QC questions
4 months ago by Bastien Hervé 6.5k
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1
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724
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Comment: Comment: Trajectory Analysis scRNA-seq with one cell type and two developmental stages
4 months ago by Bastien Hervé 6.5k
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724
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Comment: Comment: Trajectory Analysis scRNA-seq with one cell type and two developmental stages
4 months ago by Bastien Hervé 6.5k
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1.0k
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Answer: Answer: Issue in circular heatmap, the rows value are getting interchanged.
5 months ago by Bastien Hervé 6.5k
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1.5k
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Comment: Comment: Anyone familiar with studies on computational neuroscience focused on consciousn
5 months ago by Bastien Hervé 6.5k
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1.5k
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Comment: Comment: Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
5 months ago by Bastien Hervé 6.5k
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2.9k
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Comment: Comment: STAR aligner problem on local laptop
5 months ago by Bastien Hervé 6.5k
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594
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Answer: Answer: Integration of NanoString CosMx FOVs
5 months ago by Bastien Hervé 6.5k
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1.4k
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Answer: Answer: Pie Charts: to use or not to use
5 months ago by Bastien Hervé 6.5k
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1.1k
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Comment: Comment: Single cell expression and accessibility integration using cellxgene data
5 months ago by Bastien Hervé 6.5k
2
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651
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Answer: Answer: Regressing variables for finding Differentially expressed genes
5 months ago by Bastien Hervé 6.5k
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1
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1.1k
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Comment: Comment: Single cell expression and accessibility integration using cellxgene data
5 months ago by Bastien Hervé 6.5k
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1.2k
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Answer: Answer: GSEA and Cytoscape Enrichment maps
5 months ago by Bastien Hervé 6.5k
2
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1
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1.5k
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Comment: Comment: Circular heatmap using circos.heatmap in R
5 months ago by Bastien Hervé 6.5k
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1
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1.5k
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Comment: Comment: Circular heatmap using circos.heatmap in R
5 months ago by Bastien Hervé 6.5k
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1.5k
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Answer: Answer: Circular heatmap using circos.heatmap in R
5 months ago by Bastien Hervé 6.5k
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1.2k
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Comment: Comment: Ggplot make boxplots more wide
6 months ago by Bastien Hervé 6.5k
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1
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1.2k
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Comment: Comment: Ggplot make boxplots more wide
6 months ago by Bastien Hervé 6.5k
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683
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Comment: Comment: Accessible color palettes for charts and dataviz
6 months ago by Bastien Hervé 6.5k
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1
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1.5k
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Comment: Comment: Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
6 months ago by Bastien Hervé 6.5k
0
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1
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1.5k
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Answer: Answer: Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
6 months ago by Bastien Hervé 6.5k
1
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2
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850
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Comment: Comment: Different number of fragments after doublets removal in each run
6 months ago by Bastien Hervé 6.5k
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1
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710
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Comment: Comment: DEG analysys using pseudobulk from single cell RNA-seq
7 months ago by Bastien Hervé 6.5k
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789
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Comment: Comment: Assign different color in same section of Chord diagram in R
7 months ago by Bastien Hervé 6.5k
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1
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789
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Comment: Comment: Assign different color in same section of Chord diagram in R
7 months ago by Bastien Hervé 6.5k
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2.6k
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Comment: Comment: How to introduce normalized and scaled seurat data into monocle 3?
7 months ago by Bastien Hervé 6.5k
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1
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2.4k
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Comment: Comment: Reproducibility Crisis
7 months ago by Bastien Hervé 6.5k
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3
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2.4k
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Comment: Comment: Reproducibility Crisis
7 months ago by Bastien Hervé 6.5k
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1
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2.4k
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Comment: Comment: Reproducibility Crisis
7 months ago by Bastien Hervé 6.5k
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0
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1.6k
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Comment: Comment: Tool for automatic immune cell annotation in MOUSE?
7 months ago by Bastien Hervé 6.5k
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0
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650
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Comment: Comment: Understanding sctransform
7 months ago by Bastien Hervé 6.5k
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668
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Comment: Comment: single cell compositional analysis - how adjusting for covariates (age)
7 months ago by Bastien Hervé 6.5k
1
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1
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723
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Comment: Comment: PLINK 1.07 Segmentation fault (core dumped)
8 months ago by Bastien Hervé 6.5k
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1
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871
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Comment: Comment: Difference in reads per cell between samples
8 months ago by Bastien Hervé 6.5k
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1
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871
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Answer: Answer: Difference in reads per cell between samples
8 months ago by Bastien Hervé 6.5k
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0
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565
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Comment: Comment: Assistance Required: Error with MuSiC2 Package - "pVar" Function Not Found
8 months ago by Bastien Hervé 6.5k
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0
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709
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Comment: Comment: What is indicated by the red dotted lines in the `tiny_10x_pbmc.pdf` out put fro
8 months ago by Bastien Hervé 6.5k
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1.1k
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Answer: Answer: Multiple fail points in fastqc file
8 months ago by Bastien Hervé 6.5k
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0
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25k
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Comment: Comment: The Biostar Herald for Monday, February 10, 2025
8 months ago by Bastien Hervé 6.5k
980 results • Page 1 of 20
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