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4
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0
replies
21k
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Answer: A: using python for pairwise alignment
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.5k
0
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0
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3.5k
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Answer: A: How to account for missing residues when docking small molecule ligands into a P
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.5k
0
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1
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1.7k
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Answer: A: Rotamers state in protein design
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.5k
6
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1
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3.0k
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Answer: A: protein 3-D structure prediction
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.5k
1
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1
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2.2k
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Answer: A: Automatically Recognize Which Chains Are From Protein And Which Chains From Liga
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.5k
2
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0
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3.3k
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Answer: A: PDB FILE, homology modelling
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 2.5k
0
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0
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1.8k
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Answer: A: downloading pdbids and chains of heterodimers
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 2.5k
0
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0
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14k
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Comment: C: How To Make Multiple Fasta-->Pdb Conversions For Short Peptides (4 Or 5 Aminoaci
updated 4.5 years ago by 43k • written 12.1 years ago by ★ 2.5k
2
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0
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6.9k
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Answer: A: merge pdb chains
7.6 years ago by João Rodrigues ★ 2.5k
0
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0
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6.2k
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Answer: A: mutation using PyMOL
7.7 years ago by João Rodrigues ★ 2.5k
1
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0
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1.6k
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Comment: C: Protein modelling with modeller
7.7 years ago by João Rodrigues ★ 2.5k
2
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0
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1.8k
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Answer: A: Which programs generate good images of structural biology models or molecular dy
7.7 years ago by João Rodrigues ★ 2.5k
0
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0
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1.5k
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Answer: A: Homology modelling template
7.9 years ago by João Rodrigues ★ 2.5k
1
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0
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1.5k
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Answer: A: Is there any correlation between molecule sizes and their interaction energy aft
7.9 years ago by João Rodrigues ★ 2.5k
3
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1
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4.2k
views
Answer: A: aligning a bound ligand from one PDB complex to a reference structure
7.9 years ago by João Rodrigues ★ 2.5k
0
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0
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5.0k
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Answer: Answer: Cartesian to internal coordinates (z-matrix representation)
updated 15 months ago by 43k • written 8.9 years ago by ★ 2.5k
2
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0
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3.7k
views
Answer: Answer: Beginner pymol user
updated 14 months ago by 43k • written 9.0 years ago by ★ 2.5k
0
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0
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2.3k
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Comment: Comment: Missing segments of protein and minimization
updated 14 months ago by 43k • written 9.0 years ago by ★ 2.5k
1
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0
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2.3k
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Answer: Answer: Missing segments of protein and minimization
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.5k
0
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0
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2.8k
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Comment: C: Protein RNA docking
9.0 years ago by João Rodrigues ★ 2.5k
1
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1
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2.8k
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Answer: Answer: Protein RNA docking
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.5k
0
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0
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4.2k
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Comment: C: Struggle to loop over multiple files with BioPython
9.0 years ago by João Rodrigues ★ 2.5k
0
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0
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4.2k
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Answer: Answer: Struggle to loop over multiple files with BioPython
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.5k
1
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0
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3.2k
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Comment: C: rna-pdb-tools - idea of Python library with utils (small linux-cmd-like programs
9.0 years ago by João Rodrigues ★ 2.5k
4
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1
reply
3.3k
views
Answer: Answer: Any free tool for Calculating Gasteiger-Hückel charges for ligands?
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.5k
0
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0
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3.5k
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Comment: Comment: Ligand minimization Using prodrg
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.5k
2
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1
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3.5k
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Answer: Answer: Ligand minimization Using prodrg
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.5k
0
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0
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6.5k
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Comment: C: pdb-tools: a set of Python scripts to manipulate PDB files.
9.0 years ago by João Rodrigues ★ 2.5k
1
vote
0
replies
3.2k
views
Comment: C: rna-pdb-tools - idea of Python library with utils (small linux-cmd-like programs
9.0 years ago by João Rodrigues ★ 2.5k
4
votes
2
replies
6.5k
views
Tool: pdb-tools: a set of Python scripts to manipulate PDB files.
python pdb modeling
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.5k
0
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0
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3.0k
views
Comment: C: RMSD in membrane protein simulation
9.0 years ago by João Rodrigues ★ 2.5k
0
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1
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3.0k
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Comment: C: RMSD in membrane protein simulation
9.0 years ago by João Rodrigues ★ 2.5k
0
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0
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3.0k
views
Comment: C: RMSD in membrane protein simulation
9.0 years ago by João Rodrigues ★ 2.5k
1
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0
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3.0k
views
Answer: A: RMSD in membrane protein simulation
9.0 years ago by João Rodrigues ★ 2.5k
3
votes
0
replies
4.5k
views
Answer: A: How extract coordinates of surface atoms of a protein from a pdb file?
9.0 years ago by João Rodrigues ★ 2.5k
1
vote
1
reply
2.3k
views
Comment: C: BioPython: Residues size differ from position
9.1 years ago by João Rodrigues ★ 2.5k
1
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1
reply
2.3k
views
Answer: Answer: BioPython: Residues size differ from position
updated 17 months ago by 43k • written 9.1 years ago by ★ 2.5k
0
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0
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2.9k
views
Comment: Comment: HADDOCK error: TOTAL NUMBER OF DISTANCE RESTRAINTS FOR RIGID BODY DOCKING IS ZER
updated 22 months ago by 43k • written 9.1 years ago by ★ 2.5k
0
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1
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2.9k
views
Comment: Comment: HADDOCK error: TOTAL NUMBER OF DISTANCE RESTRAINTS FOR RIGID BODY DOCKING IS ZER
9.1 years ago by João Rodrigues ★ 2.5k
0
votes
1
reply
12k
views
Comment: Comment: running modeller through python scripts
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.5k
0
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0
replies
4.8k
views
Comment: C: Use of Segments in PDB Files
9.2 years ago by João Rodrigues ★ 2.5k
3
votes
2
replies
12k
views
Answer: A: running modeller through python scripts
9.2 years ago by João Rodrigues ★ 2.5k
0
votes
0
replies
4.8k
views
Comment: C: Use of Segments in PDB Files
9.2 years ago by João Rodrigues ★ 2.5k
1
vote
0
replies
18k
views
Answer: Answer: Renumbering Residues in PyMOL
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.5k
1
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0
replies
2.2k
views
Answer: A: Micro RNA docking
9.3 years ago by João Rodrigues ★ 2.5k
0
votes
1
reply
3.2k
views
Comment: C: Energy minimization for protein model refinement
9.3 years ago by João Rodrigues ★ 2.5k
2
votes
1
reply
3.2k
views
Answer: Answer: Energy minimization for protein model refinement
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.5k
3
votes
0
replies
5.6k
views
Answer: Answer: which are the best docking softwares available?
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 2.5k
1
vote
1
reply
2.8k
views
Answer: A: Setting up an alert for new human PDB ligands
9.5 years ago by João Rodrigues ★ 2.5k
1
vote
0
replies
1.7k
views
Answer: A: similarity of 3D and sequential structure of protein in three bacteria?
9.5 years ago by João Rodrigues ★ 2.5k
230 results • Page 1 of 5
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