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Comment:
C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.2 years ago by
prasundutta87
▴ 660
0
votes
0
replies
11k
views
Comment:
C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.2 years ago by
prasundutta87
▴ 660
0
votes
1
reply
11k
views
Comment:
C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.2 years ago by
prasundutta87
▴ 660
0
votes
0
replies
2.5k
views
Comment:
C: GATK tool to merge INDEL with SNPs with the same set of samples
3.2 years ago by
prasundutta87
▴ 660
0
votes
0
replies
1.5k
views
Comment:
C: bcftools norm resulting in '*' in alternate allele
3.2 years ago by
prasundutta87
▴ 660
0
votes
1
reply
3.2k
views
Comment:
C: Determine the sex of a sample from a .vcf
3.2 years ago by
prasundutta87
▴ 660
0
votes
0
replies
840
views
Comment:
C: Annotating variants using latest version fof the genome
3.5 years ago by
prasundutta87
▴ 660
0
votes
1
reply
840
views
Comment:
C: Annotating variants using latest version fof the genome
3.5 years ago by
prasundutta87
▴ 660
1
vote
0
replies
2.3k
views
Comment:
C: Identifying Private SNPs between multi sample vcf files.
3.7 years ago by
prasundutta87
▴ 660
0
votes
1
reply
948
views
Comment:
C: methylation % calculation for targeted region
3.8 years ago by
prasundutta87
▴ 660
0
votes
0
replies
948
views
Comment:
C: methylation % calculation for targeted region
3.8 years ago by
prasundutta87
▴ 660
0
votes
0
replies
2.9k
views
Comment:
C: EPIC methylation manifest GRch38 query
3.9 years ago by
prasundutta87
▴ 660
0
votes
1
reply
6.4k
views
Comment:
C: Is plotMDS (from limma package) a PCA (Principal Component Analysis) or a PCoA (
updated 3.9 years ago by
ATpoint
82k • written 3.9 years ago by
prasundutta87
▴ 660
0
votes
1
reply
2.1k
views
Comment:
C: query regarding using manifest and annotation in Minfi (EPIC Methylation array a
4.0 years ago by
prasundutta87
▴ 660
0
votes
0
replies
763
views
Comment:
C: array jobs accessing one binary in population genetics software
4.1 years ago by
prasundutta87
▴ 660
0
votes
0
replies
3.1k
views
Comment:
C: illumina sequencing dual index query
4.2 years ago by
prasundutta87
▴ 660
0
votes
1
reply
3.1k
views
Comment:
C: illumina sequencing dual index query
4.2 years ago by
prasundutta87
▴ 660
0
votes
1
reply
3.1k
views
Comment:
C: illumina sequencing dual index query
4.2 years ago by
prasundutta87
▴ 660
0
votes
0
replies
3.1k
views
Comment:
C: illumina sequencing dual index query
4.2 years ago by
prasundutta87
▴ 660
0
votes
1
reply
3.1k
views
Comment:
C: illumina sequencing dual index query
4.2 years ago by
prasundutta87
▴ 660
0
votes
0
replies
1.5k
views
Comment:
C: outliers in XP-EHH
5.1 years ago by
prasundutta87
▴ 660
0
votes
1
reply
4.8k
views
Comment:
C: Difference between Private SNPs and Singleton SNPs
5.2 years ago by
prasundutta87
▴ 660
0
votes
1
reply
4.8k
views
Comment:
C: Difference between Private SNPs and Singleton SNPs
5.2 years ago by
prasundutta87
▴ 660
0
votes
1
reply
5.0k
views
Comment:
C: PCAtools: everything Principal Components Analysis
5.2 years ago by
prasundutta87
▴ 660
1
vote
1
reply
5.0k
views
Comment:
A: PCAtools: everything Principal Components Analysis
5.2 years ago by
prasundutta87
▴ 660
1
vote
2
replies
8.8k
views
Comment:
A: HISAT2 MAPQ scoring scheme
5.3 years ago by
prasundutta87
▴ 660
0
votes
0
replies
3.3k
views
Comment:
C: manhattan plot with Fst values
5.4 years ago by
prasundutta87
▴ 660
0
votes
1
reply
3.3k
views
Comment:
A: manhattan plot with Fst values
5.4 years ago by
prasundutta87
▴ 660
0
votes
1
reply
2.2k
views
Comment:
C: no gene_id for tRNA in GFF3
5.5 years ago by
prasundutta87
▴ 660
1
vote
1
reply
2.2k
views
Comment:
C: no gene_id for tRNA in GFF3
5.5 years ago by
prasundutta87
▴ 660
0
votes
1
reply
2.2k
views
Comment:
C: no gene_id for tRNA in GFF3
5.5 years ago by
prasundutta87
▴ 660
0
votes
0
replies
1.7k
views
Comment:
C: allele specific expression (ASE) reference ratio plot query
5.5 years ago by
prasundutta87
▴ 660
0
votes
0
replies
1.7k
views
Comment:
C: Filtering results difference amongst VCF files
5.6 years ago by
prasundutta87
▴ 660
0
votes
0
replies
1.7k
views
Comment:
C: Filtering results difference amongst VCF files
5.6 years ago by
prasundutta87
▴ 660
0
votes
1
reply
1.7k
views
Comment:
C: Filtering results difference amongst VCF files
5.6 years ago by
prasundutta87
▴ 660
0
votes
0
replies
8.7k
views
Comment:
C: GATK 4 GenomeAnalysisTK still available? (Unable to access jarfile)
5.6 years ago by
prasundutta87
▴ 660
0
votes
0
replies
1.8k
views
Comment:
C: autosomal ancestry inference
5.7 years ago by
prasundutta87
▴ 660
0
votes
0
replies
4.3k
views
Comment:
C: PCA implementation in plink
5.7 years ago by
prasundutta87
▴ 660
0
votes
0
replies
851
views
Comment:
C: query on a pre-process step involving GFF3
5.7 years ago by
prasundutta87
▴ 660
0
votes
0
replies
1.2k
views
Comment:
C: some questions on GFF3
5.7 years ago by
prasundutta87
▴ 660
0
votes
0
replies
2.6k
views
Comment:
C: gffread query for gff to gtf conversion
5.7 years ago by
prasundutta87
▴ 660
0
votes
0
replies
931
views
Comment:
C: sanity check methods for checking genome assembly coordinate changes
5.8 years ago by
prasundutta87
▴ 660
0
votes
1
reply
931
views
Comment:
C: sanity check methods for checking genome assembly coordinate changes
5.8 years ago by
prasundutta87
▴ 660
0
votes
0
replies
1.2k
views
Comment:
C: variant calling after reference genome is updated
5.8 years ago by
prasundutta87
▴ 660
0
votes
0
replies
1.2k
views
Comment:
C: variant calling after reference genome is updated
5.8 years ago by
prasundutta87
▴ 660
0
votes
1
reply
1.2k
views
Comment:
C: variant calling after reference genome is updated
5.8 years ago by
prasundutta87
▴ 660
0
votes
0
replies
4.7k
views
Comment:
C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by
prasundutta87
▴ 660
0
votes
1
reply
4.7k
views
Comment:
C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by
prasundutta87
▴ 660
0
votes
2
replies
4.7k
views
Comment:
C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by
prasundutta87
▴ 660
0
votes
0
replies
4.7k
views
Comment:
C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by
prasundutta87
▴ 660
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