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Answer: Answer: Refcall in VCF
10 weeks ago by prasundutta87 ▴ 730
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1
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1.6k
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Comment: Comment: VEP filtering query
22 months ago by prasundutta87 ▴ 730
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1
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1.6k
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Comment: Comment: VEP filtering query
22 months ago by prasundutta87 ▴ 730
2
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4
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1.6k
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VEP filtering query
ensembl-vep
22 months ago by prasundutta87 ▴ 730
0
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1
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5.9k
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Comment: Comment: Which minimap2 parameters to set while performing mapping to avoid such mismatch
2.2 years ago by prasundutta87 ▴ 730
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0
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2.5k
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Comment: Comment: Coverage histogram query
2.2 years ago by prasundutta87 ▴ 730
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1
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2.5k
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Comment: Comment: Coverage histogram query
2.2 years ago by prasundutta87 ▴ 730
0
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1
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2.5k
views
Comment: Comment: Coverage histogram query
2.2 years ago by prasundutta87 ▴ 730
0
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0
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2.5k
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Comment: Comment: Coverage histogram query
2.2 years ago by prasundutta87 ▴ 730
0
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1
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2.5k
views
Comment: Comment: Coverage histogram query
2.2 years ago by prasundutta87 ▴ 730
1
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10
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2.5k
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Coverage histogram query
Alignment
2.2 years ago by prasundutta87 ▴ 730
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1
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1.5k
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Comment: Comment: I need help with a methyl array data analysis
2.4 years ago by prasundutta87 ▴ 730
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0
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1.2k
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Comment: Comment: best practice to choose AF threshold based on population number
2.6 years ago by prasundutta87 ▴ 730
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2
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1.2k
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best practice to choose AF threshold based on population number
VCF AF allele-frequency
2.6 years ago by prasundutta87 ▴ 730
0
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0
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1.6k
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Comment: Comment: Very high coverage Nanopore alignment Hg38
2.6 years ago by prasundutta87 ▴ 730
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0
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1.7k
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Comment: Comment: VCF file filter for breakpoints
2.7 years ago by prasundutta87 ▴ 730
1
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1
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1.7k
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Comment: Comment: VCF file filter for breakpoints
2.7 years ago by prasundutta87 ▴ 730
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0
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2.0k
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Comment: Comment: Sample Level Filtering During GATK Germline Short Variant Discovery
2.7 years ago by prasundutta87 ▴ 730
0
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0
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591
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snpeff annotation query
snpeff structural-variation VCF
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 730
0
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0
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1.8k
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Comment: Comment: alternate allele frequency and minor allele frequency
3.0 years ago by prasundutta87 ▴ 730
1
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2
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1.8k
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alternate allele frequency and minor allele frequency
rare common SNV SV VCF
3.0 years ago by prasundutta87 ▴ 730
0
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0
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1.4k
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Answer: Answer: How to parse the output file of snpEFF
3.2 years ago by prasundutta87 ▴ 730
2
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0
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15k
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Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.2 years ago by prasundutta87 ▴ 730
3
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2
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15k
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Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.2 years ago by prasundutta87 ▴ 730
9
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11
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15k
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Correct way to calculate VAF (Variant allele fraction) from a VCF file
VCF snp
3.2 years ago by prasundutta87 ▴ 730
0
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0
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556
views
Tool for mode of inheritance based filtering for structural variants
StructuralVariants genotypes SNVs trio modeOfInheritance
3.6 years ago by prasundutta87 ▴ 730
0
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1
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2.0k
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Comment: Comment: How to run fastqc for 500 raw sequence reads (100 single end and 400 paired end
3.6 years ago by prasundutta87 ▴ 730
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0
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5.1k
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Comment: Comment: RNA Seq data network analysis
3.8 years ago by prasundutta87 ▴ 730
2
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2
replies
4.0k
views
EPIC methylation manifest GRch38 query
methylation coordinates EPIC bedgraph CpG
updated 3.8 years ago by ▴ 10 • written 5.4 years ago by ▴ 730
0
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0
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654
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query on filtering/dropping samples based on total reads (yield)
paired-end fastq Illumina
4.0 years ago by prasundutta87 ▴ 730
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0
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2.8k
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Comment: Comment: EPIC array data - How to find the total number of genes in the array?
4.0 years ago by prasundutta87 ▴ 730
0
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1
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2.8k
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Answer: Answer: EPIC array data - How to find the total number of genes in the array?
4.0 years ago by prasundutta87 ▴ 730
0
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0
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3.6k
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Comment: Comment: Variant annotation using VEP
4.0 years ago by prasundutta87 ▴ 730
0
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1
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3.6k
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Comment: Comment: Variant annotation using VEP
4.0 years ago by prasundutta87 ▴ 730
0
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1
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3.6k
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Comment: Comment: Variant annotation using VEP
4.0 years ago by prasundutta87 ▴ 730
0
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1
reply
3.6k
views
Comment: Comment: Variant annotation using VEP
4.0 years ago by prasundutta87 ▴ 730
0
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1
reply
3.6k
views
Answer: Answer: Variant annotation using VEP
4.0 years ago by prasundutta87 ▴ 730
0
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0
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939
views
Answer: Answer: calculation of gene coverage
4.0 years ago by prasundutta87 ▴ 730
0
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1
reply
883
views
Structural variation nomenclature ambiguity
Structural_Variation
updated 4.1 years ago by ▴ 630 • written 4.1 years ago by ▴ 730
0
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0
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1.8k
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Comment: Comment: Annotate Structural variants with population specific allele frequency values
4.2 years ago by prasundutta87 ▴ 730
0
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2
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1.8k
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Annotate Structural variants with population specific allele frequency values
allele Structural_variation VEP frequency VCF
4.2 years ago by prasundutta87 ▴ 730
1
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1
reply
4.0k
views
Answer: Answer: Extract CDS from maker gff
4.4 years ago by prasundutta87 ▴ 730
0
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0
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2.5k
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Comment: Comment: VEP chromosome name query
4.4 years ago by prasundutta87 ▴ 730
3
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6
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2.5k
views
VEP chromosome name query
ensembl VCF annotation VEP
4.4 years ago by prasundutta87 ▴ 730
0
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0
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2.5k
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Comment: Comment: VEP chromosome name query
4.4 years ago by prasundutta87 ▴ 730
0
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1
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2.5k
views
Comment: Comment: VEP chromosome name query
4.4 years ago by prasundutta87 ▴ 730
1
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0
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1.1k
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Comment: Comment: How to calculate the *necessary* sequencing depth for a SNP
4.4 years ago by prasundutta87 ▴ 730
0
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0
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769
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About Structural variation genotypes
variants Structural-variants variant-calling genotypes
updated 2.1 years ago by 45k • written 4.4 years ago by ▴ 730
0
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1
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2.7k
views
Comment: Comment: Core Dumped - STAR mapping
4.4 years ago by prasundutta87 ▴ 730
1
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1
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2.1k
views
Comment: Comment: Masking sites in a vcf file
4.4 years ago by prasundutta87 ▴ 730
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