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Comment: Comment: VEP filtering query
8 months ago by prasundutta87 ▴ 670
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791
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Comment: Comment: VEP filtering query
8 months ago by prasundutta87 ▴ 670
2
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4
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791
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VEP filtering query
ensembl-vep
8 months ago by prasundutta87 ▴ 670
0
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1
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2.6k
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Comment: Comment: Which minimap2 parameters to set while performing mapping to avoid such mismatch
12 months ago by prasundutta87 ▴ 670
1
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0
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1.5k
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Comment: Comment: Coverage histogram query
12 months ago by prasundutta87 ▴ 670
0
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1
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1.5k
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Comment: Comment: Coverage histogram query
13 months ago by prasundutta87 ▴ 670
0
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1
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1.5k
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Comment: Comment: Coverage histogram query
13 months ago by prasundutta87 ▴ 670
0
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0
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1.5k
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Comment: Comment: Coverage histogram query
13 months ago by prasundutta87 ▴ 670
0
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1
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1.5k
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Comment: Comment: Coverage histogram query
13 months ago by prasundutta87 ▴ 670
1
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10
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1.5k
views
Coverage histogram query
Alignment
12 months ago by prasundutta87 ▴ 670
0
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1
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823
views
Comment: Comment: I need help with a methyl array data analysis
15 months ago by prasundutta87 ▴ 670
0
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0
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719
views
Comment: Comment: best practice to choose AF threshold based on population number
18 months ago by prasundutta87 ▴ 670
0
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2
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719
views
best practice to choose AF threshold based on population number
VCF AF allele-frequency
18 months ago by prasundutta87 ▴ 670
0
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0
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957
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Comment: Comment: Very high coverage Nanopore alignment Hg38
18 months ago by prasundutta87 ▴ 670
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0
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1.2k
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Comment: Comment: VCF file filter for breakpoints
18 months ago by prasundutta87 ▴ 670
1
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1
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1.2k
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Comment: Comment: VCF file filter for breakpoints
18 months ago by prasundutta87 ▴ 670
0
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0
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1.2k
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Comment: Comment: Sample Level Filtering During GATK Germline Short Variant Discovery
18 months ago by prasundutta87 ▴ 670
0
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0
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376
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snpeff annotation query
snpeff structural-variation VCF
updated 18 months ago by 44k • written 18 months ago by ▴ 670
0
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0
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1.1k
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Comment: Comment: alternate allele frequency and minor allele frequency
22 months ago by prasundutta87 ▴ 670
0
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2
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1.1k
views
alternate allele frequency and minor allele frequency
rare common SNV SV VCF
22 months ago by prasundutta87 ▴ 670
0
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0
replies
1.0k
views
Answer: Answer: How to parse the output file of snpEFF
2.0 years ago by prasundutta87 ▴ 670
2
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0
replies
12k
views
Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
2.1 years ago by prasundutta87 ▴ 670
1
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2
replies
12k
views
Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
2.1 years ago by prasundutta87 ▴ 670
4
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11
replies
12k
views
Correct way to calculate VAF (Variant allele fraction) from a VCF file
VCF snp
2.1 years ago by prasundutta87 ▴ 670
0
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0
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354
views
Tool for mode of inheritance based filtering for structural variants
StructuralVariants genotypes SNVs trio modeOfInheritance
2.4 years ago by prasundutta87 ▴ 670
0
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1
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1.2k
views
Comment: Comment: How to run fastqc for 500 raw sequence reads (100 single end and 400 paired end
2.5 years ago by prasundutta87 ▴ 670
0
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0
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4.6k
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Comment: Comment: RNA Seq data network analysis
2.6 years ago by prasundutta87 ▴ 670
2
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2
replies
3.1k
views
EPIC methylation manifest GRch38 query
methylation coordinates EPIC bedgraph CpG
updated 2.6 years ago by ▴ 10 • written 4.3 years ago by ▴ 670
0
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0
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471
views
query on filtering/dropping samples based on total reads (yield)
paired-end fastq Illumina
2.8 years ago by prasundutta87 ▴ 670
0
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0
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1.7k
views
Comment: Comment: EPIC array data - How to find the total number of genes in the array?
2.9 years ago by prasundutta87 ▴ 670
0
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1
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1.7k
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Answer: Answer: EPIC array data - How to find the total number of genes in the array?
2.9 years ago by prasundutta87 ▴ 670
0
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0
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2.2k
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Comment: Comment: Variant annotation using VEP
2.9 years ago by prasundutta87 ▴ 670
0
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1
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2.2k
views
Comment: Comment: Variant annotation using VEP
2.9 years ago by prasundutta87 ▴ 670
0
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1
reply
2.2k
views
Comment: Comment: Variant annotation using VEP
2.9 years ago by prasundutta87 ▴ 670
0
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1
reply
2.2k
views
Comment: Comment: Variant annotation using VEP
2.9 years ago by prasundutta87 ▴ 670
0
votes
1
reply
2.2k
views
Answer: Answer: Variant annotation using VEP
2.9 years ago by prasundutta87 ▴ 670
0
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0
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666
views
Answer: Answer: calculation of gene coverage
2.9 years ago by prasundutta87 ▴ 670
0
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1
reply
644
views
Structural variation nomenclature ambiguity
Structural_Variation
updated 3.0 years ago by ▴ 560 • written 3.0 years ago by ▴ 670
0
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0
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1.3k
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Comment: Comment: Annotate Structural variants with population specific allele frequency values
3.0 years ago by prasundutta87 ▴ 670
0
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2
replies
1.3k
views
Annotate Structural variants with population specific allele frequency values
allele Structural_variation VEP frequency VCF
3.0 years ago by prasundutta87 ▴ 670
1
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1
reply
2.5k
views
Answer: Answer: Extract CDS from maker gff
3.2 years ago by prasundutta87 ▴ 670
0
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0
replies
1.6k
views
Comment: Comment: VEP chromosome name query
3.2 years ago by prasundutta87 ▴ 670
3
votes
6
replies
1.6k
views
VEP chromosome name query
ensembl VCF annotation VEP
3.2 years ago by prasundutta87 ▴ 670
0
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0
replies
1.6k
views
Comment: Comment: VEP chromosome name query
3.2 years ago by prasundutta87 ▴ 670
0
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1
reply
1.6k
views
Comment: Comment: VEP chromosome name query
3.2 years ago by prasundutta87 ▴ 670
1
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0
replies
716
views
Comment: Comment: How to calculate the *necessary* sequencing depth for a SNP
3.3 years ago by prasundutta87 ▴ 670
0
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0
replies
563
views
About Structural variation genotypes
variants Structural-variants variant-calling genotypes
updated 11 months ago by 44k • written 3.3 years ago by ▴ 670
0
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1
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1.9k
views
Comment: Comment: Core Dumped - STAR mapping
3.3 years ago by prasundutta87 ▴ 670
1
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1
reply
1.6k
views
Comment: Comment: Masking sites in a vcf file
3.3 years ago by prasundutta87 ▴ 670
0
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1
reply
1.9k
views
Comment: Comment: Core Dumped - STAR mapping
3.3 years ago by prasundutta87 ▴ 670
260 results • Page 1 of 6
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