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Answer: Answer: IGV coverage bar has color, but no mutation?
24 months ago by Amitm ★ 2.3k
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1
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3.6k
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Answer: Answer: Need help understanding reference transcriptome and where to download
24 months ago by Amitm ★ 2.3k
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1
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4.3k
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Answer: Answer: R Columns to Seurat Object
24 months ago by Amitm ★ 2.3k
3
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1
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2.3k
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Answer: Answer: How to download the entire Run from Basespace illumina
2.1 years ago by Amitm ★ 2.3k
3
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1
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1.1k
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Answer: C: Detecting CNVs from BAM file
4.1 years ago by Amitm ★ 2.3k
2
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1
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8.7k
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Answer: A: STAR and StringTie to identify novel isoforms (please check my work)
4.1 years ago by Amitm ★ 2.3k
4
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1
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5.2k
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Answer: C: how to interpret a CNV scatter plot
4.3 years ago by Amitm ★ 2.3k
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2
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1.4k
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Answer: A: Creating bed file for gene specific variant extraction from VCF file
4.3 years ago by Amitm ★ 2.3k
2
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1
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2.9k
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Answer: A: TSS of canonical transcripts
4.4 years ago by Amitm ★ 2.3k
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0
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1.2k
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Answer: C: Classifying normal vs cancer tissues from mutational data
5.0 years ago by Amitm ★ 2.3k
4
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2
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1.8k
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Answer: C: Suggestion needed for finding fusion transcripts
5.0 years ago by Amitm ★ 2.3k
2
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1
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1.5k
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Answer: C: Interested in RNA-Seq splicing analysis - go for paired-end shorter or single-en
5.0 years ago by Amitm ★ 2.3k
2
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0
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1.0k
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Answer: C: How I deal with redundant genes in microarray
5.0 years ago by Amitm ★ 2.3k
2
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1
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3.7k
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Answer: A: Low percent of RNA-seq reads mapping
5.0 years ago by Amitm ★ 2.3k
5
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1
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1.9k
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Answer: A: What is a better strategy for finding novel transcripts?
5.0 years ago by Amitm ★ 2.3k
0
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0
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3.2k
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Answer: A: What is the state of multi-omics dataset ?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.3k
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0
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12k
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Answer: C: how to download gene annotation bed file from ensembl?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.3k
1
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0
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2.9k
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Answer: A: Agilent SureSelect design miss some target regions
updated 5.1 years ago by 44k • written 9.0 years ago by ★ 2.3k
0
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1
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3.5k
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Answer: C: Obtaining length and %GC of genes using Biomart
updated 5.1 years ago by 44k • written 9.0 years ago by ★ 2.3k
1
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0
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8.4k
views
Answer: A: RefSeq Ids(NM*, NR*) to ensemble transcript Ids (ENST*)
updated 5.1 years ago by 44k • written 9.0 years ago by ★ 2.3k
1
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0
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8.4k
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Answer: A: Intersect multiple BED files
updated 5.1 years ago by 44k • written 9.0 years ago by ★ 2.3k
0
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0
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4.8k
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Answer: A: Can I use sorted bam files from STAR with Stringtie?
updated 5.1 years ago by 44k • written 9.0 years ago by ★ 2.3k
1
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1
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5.6k
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Answer: A: How can I detect lncRNA?
updated 5.1 years ago by 44k • written 9.0 years ago by ★ 2.3k
1
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1
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5.3k
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Answer: A: Fusion gene detection software
updated 5.1 years ago by 44k • written 9.1 years ago by ★ 2.3k
2
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1
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3.2k
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Answer: A: RNA Expression Transcript Level Collapse
updated 5.2 years ago by 44k • written 9.6 years ago by ★ 2.3k
0
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1
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6.5k
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Answer: A: Removing everything after the last underscore in the header of a fastafile
6.4 years ago by Amitm ★ 2.3k
1
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2
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7.6k
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Answer: C: GISTIC input parameters.
6.4 years ago by Amitm ★ 2.3k
3
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1
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2.1k
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Answer: A: Different results for differentially expressed genes in RNA-seq analysis with cu
6.4 years ago by Amitm ★ 2.3k
0
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0
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1.1k
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Answer: A: What is a good way to compare the WES and panel seq results from the same set of
6.4 years ago by Amitm ★ 2.3k
6
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1
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4.1k
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Answer: A: TLEN sam format
6.5 years ago by Amitm ★ 2.3k
4
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2
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11k
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Answer: C: STAR do i need --twopassMode ?
6.9 years ago by Amitm ★ 2.3k
2
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0
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1.5k
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Answer: A: Mutations and copy number variations from DNA-Seq
7.0 years ago by Amitm ★ 2.3k
3
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2
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5.6k
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Answer: A: How to annotate CNV events with gene information?
8.2 years ago by Amitm ★ 2.3k
0
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0
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2.2k
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Answer: A: TCGA melanoma brain metastasis
8.3 years ago by Amitm ★ 2.3k
2
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0
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2.4k
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Answer: A: InterPro Scan error with nucleotide sequences
8.4 years ago by Amitm ★ 2.3k
2
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0
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2.5k
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Answer: A: Looking for a cancer dataset for RNA-Seq workshop
8.4 years ago by Amitm ★ 2.3k
2
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1
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2.8k
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Answer: A: Annotate VCF with RepeatMasker
8.4 years ago by Amitm ★ 2.3k
1
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0
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2.1k
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Answer: A: RPKMs On Transcript Level
8.4 years ago by Amitm ★ 2.3k
1
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1
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2.6k
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Answer: A: Annotation of repeatative elements
8.4 years ago by Amitm ★ 2.3k
1
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0
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3.0k
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Answer: C: Predict if the mutation is activating or deactivating
8.4 years ago by Amitm ★ 2.3k
2
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1
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8.4k
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Answer: A: RNA-seq RPKM significance cut off
8.4 years ago by Amitm ★ 2.3k
0
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0
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1.3k
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Answer: A: bar code manipulation
8.4 years ago by Amitm ★ 2.3k
0
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0
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1.1k
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Answer: A: What is the gene corresponding to MIR382 RNA molecule?
8.4 years ago by Amitm ★ 2.3k
1
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1
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2.0k
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Answer: A: getting reads counts at RefSeq genes
8.6 years ago by Amitm ★ 2.3k
4
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2
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3.7k
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Answer: A: Does CDS, start_codon and stop_codon in gtf affect transcriptome assembly by Str
8.7 years ago by Amitm ★ 2.3k
2
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1
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7.4k
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Answer: A: Picard Markduplicates output
8.7 years ago by Amitm ★ 2.3k
0
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1
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3.7k
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Answer: A: ADTEx coverage issue
8.7 years ago by Amitm ★ 2.3k
4
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1
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3.6k
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Answer: A: Non-cancer somatic mutation calling
8.7 years ago by Amitm ★ 2.3k
0
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1
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3.3k
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Answer: A: BLAT: how to select best hit at one genomic position? (queries are repeats)
8.8 years ago by Amitm ★ 2.3k
0
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3
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3.0k
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Answer: A: High percentage of UTR mutations in RNAseq
8.8 years ago by Amitm ★ 2.3k
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