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491
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Answer: Answer: IGV coverage bar has color, but no mutation?
8 weeks ago by Amitm ★ 2.1k
1
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1
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400
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Answer: Answer: Need help understanding reference transcriptome and where to download
8 weeks ago by Amitm ★ 2.1k
0
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1
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868
views
Answer: Answer: R Columns to Seurat Object
9 weeks ago by Amitm ★ 2.1k
2
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1
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414
views
Answer: Answer: How to download the entire Run from Basespace illumina
3 months ago by Amitm ★ 2.1k
3
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1
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578
views
Answer: C: Detecting CNVs from BAM file
2.2 years ago by Amitm ★ 2.1k
1
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1
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4.0k
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Answer: A: STAR and StringTie to identify novel isoforms (please check my work)
2.3 years ago by Amitm ★ 2.1k
3
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1
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2.6k
views
Answer: C: how to interpret a CNV scatter plot
2.5 years ago by Amitm ★ 2.1k
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2
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780
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Answer: A: Creating bed file for gene specific variant extraction from VCF file
2.5 years ago by Amitm ★ 2.1k
2
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1
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1.4k
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Answer: A: TSS of canonical transcripts
2.5 years ago by Amitm ★ 2.1k
1
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0
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660
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Answer: C: Classifying normal vs cancer tissues from mutational data
3.2 years ago by Amitm ★ 2.1k
4
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2
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998
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Answer: C: Suggestion needed for finding fusion transcripts
3.2 years ago by Amitm ★ 2.1k
2
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1
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963
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Answer: C: Interested in RNA-Seq splicing analysis - go for paired-end shorter or single-en
3.2 years ago by Amitm ★ 2.1k
2
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0
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696
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Answer: C: How I deal with redundant genes in microarray
3.2 years ago by Amitm ★ 2.1k
2
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1
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1.7k
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Answer: A: Low percent of RNA-seq reads mapping
3.2 years ago by Amitm ★ 2.1k
5
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1
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1.1k
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Answer: A: What is a better strategy for finding novel transcripts?
3.2 years ago by Amitm ★ 2.1k
0
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0
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2.7k
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Answer: A: What is the state of multi-omics dataset ?
updated 3.2 years ago by 38k • written 7.1 years ago by ★ 2.1k
1
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0
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10k
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Answer: C: how to download gene annotation bed file from ensembl?
updated 3.2 years ago by 38k • written 7.1 years ago by ★ 2.1k
1
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0
replies
2.3k
views
Answer: A: Agilent SureSelect design miss some target regions
updated 3.2 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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1
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3.1k
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Answer: C: Obtaining length and %GC of genes using Biomart
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
1
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0
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7.0k
views
Answer: A: RefSeq Ids(NM*, NR*) to ensemble transcript Ids (ENST*)
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
1
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0
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6.3k
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Answer: A: Intersect multiple BED files
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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0
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4.2k
views
Answer: A: Can I use sorted bam files from STAR with Stringtie?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
1
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1
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4.2k
views
Answer: A: How can I detect lncRNA?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
1
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1
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4.1k
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Answer: A: Fusion gene detection software
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
2
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1
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2.8k
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Answer: A: RNA Expression Transcript Level Collapse
updated 3.4 years ago by 38k • written 7.8 years ago by ★ 2.1k
0
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1
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4.8k
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Answer: A: Removing everything after the last underscore in the header of a fastafile
4.6 years ago by Amitm ★ 2.1k
1
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2
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6.0k
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Answer: C: GISTIC input parameters.
4.6 years ago by Amitm ★ 2.1k
3
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1
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1.7k
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Answer: A: Different results for differentially expressed genes in RNA-seq analysis with cu
4.6 years ago by Amitm ★ 2.1k
0
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0
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822
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Answer: A: What is a good way to compare the WES and panel seq results from the same set of
4.6 years ago by Amitm ★ 2.1k
6
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1
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2.9k
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Answer: A: TLEN sam format
4.7 years ago by Amitm ★ 2.1k
3
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2
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7.9k
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Answer: C: STAR do i need --twopassMode ?
5.1 years ago by Amitm ★ 2.1k
2
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0
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1.2k
views
Answer: A: Mutations and copy number variations from DNA-Seq
5.2 years ago by Amitm ★ 2.1k
3
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2
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4.6k
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Answer: A: How to annotate CNV events with gene information?
6.4 years ago by Amitm ★ 2.1k
0
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0
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2.0k
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Answer: A: TCGA melanoma brain metastasis
6.5 years ago by Amitm ★ 2.1k
2
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0
replies
2.0k
views
Answer: A: InterPro Scan error with nucleotide sequences
6.5 years ago by Amitm ★ 2.1k
2
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0
replies
1.9k
views
Answer: A: Looking for a cancer dataset for RNA-Seq workshop
6.5 years ago by Amitm ★ 2.1k
2
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1
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2.0k
views
Answer: A: Annotate VCF with RepeatMasker
6.5 years ago by Amitm ★ 2.1k
1
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0
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1.7k
views
Answer: A: RPKMs On Transcript Level
6.5 years ago by Amitm ★ 2.1k
1
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1
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2.0k
views
Answer: A: Annotation of repeatative elements
6.6 years ago by Amitm ★ 2.1k
1
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0
replies
2.5k
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Answer: C: Predict if the mutation is activating or deactivating
6.6 years ago by Amitm ★ 2.1k
2
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1
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7.2k
views
Answer: A: RNA-seq RPKM significance cut off
6.6 years ago by Amitm ★ 2.1k
0
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0
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1.0k
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Answer: A: bar code manipulation
6.6 years ago by Amitm ★ 2.1k
0
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0
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881
views
Answer: A: What is the gene corresponding to MIR382 RNA molecule?
6.6 years ago by Amitm ★ 2.1k
1
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1
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1.5k
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Answer: A: getting reads counts at RefSeq genes
6.8 years ago by Amitm ★ 2.1k
4
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2
replies
3.0k
views
Answer: A: Does CDS, start_codon and stop_codon in gtf affect transcriptome assembly by Str
6.8 years ago by Amitm ★ 2.1k
2
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1
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6.1k
views
Answer: A: Picard Markduplicates output
6.8 years ago by Amitm ★ 2.1k
0
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1
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2.8k
views
Answer: A: ADTEx coverage issue
6.8 years ago by Amitm ★ 2.1k
4
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1
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2.9k
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Answer: A: Non-cancer somatic mutation calling
6.8 years ago by Amitm ★ 2.1k
0
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1
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2.5k
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Answer: A: BLAT: how to select best hit at one genomic position? (queries are repeats)
6.9 years ago by Amitm ★ 2.1k
0
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3
replies
2.3k
views
Answer: A: High percentage of UTR mutations in RNAseq
7.0 years ago by Amitm ★ 2.1k
81 results • Page 1 of 2
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