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Comment: Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI
2.5 years ago by cfos4698 ★ 1.1k
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2.0k
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Answer: Answer: Filtering VCF by specific tag in INFO field
2.5 years ago by cfos4698 ★ 1.1k
0
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1
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1.9k
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Comment: Comment: Can not get bcftools norm to join biallelics into a multiallelic.
2.5 years ago by cfos4698 ★ 1.1k
3
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3
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1.6k
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Filtering of tricky overlapping sites in VCF
vcf bcftools
2.5 years ago by cfos4698 ★ 1.1k
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1.6k
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Answer: Answer: Filtering of tricky overlapping sites in VCF
2.5 years ago by cfos4698 ★ 1.1k
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1.6k
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Comment: Comment: Filtering of tricky overlapping sites in VCF
2.5 years ago by cfos4698 ★ 1.1k
6
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1.7k
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Answer: Answer: How to extract FASTA headers in R
2.5 years ago by cfos4698 ★ 1.1k
2
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1
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7.0k
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Comment: Comment: Conda is installing older version of Spades even though latest version is there
2.6 years ago by cfos4698 ★ 1.1k
0
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1
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14k
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Comment: Comment: conda create env using .yml file leads to dependency conflicts
2.6 years ago by cfos4698 ★ 1.1k
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14k
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Comment: Comment: conda create env using .yml file leads to dependency conflicts
2.6 years ago by cfos4698 ★ 1.1k
1
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1
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14k
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Comment: Comment: conda create env using .yml file leads to dependency conflicts
2.6 years ago by cfos4698 ★ 1.1k
1
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2
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14k
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Answer: Answer: conda create env using .yml file leads to dependency conflicts
2.6 years ago by cfos4698 ★ 1.1k
1
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0
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2.2k
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Comment: Comment: Split trio vcf file
2.6 years ago by cfos4698 ★ 1.1k
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1
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2.2k
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Answer: Answer: Split trio vcf file
2.6 years ago by cfos4698 ★ 1.1k
4
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1
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4.9k
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Answer: Answer: bcftools isec output for multiple vcf files interpretations
2.6 years ago by cfos4698 ★ 1.1k
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1.0k
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Answer: Answer: Issues with clusterProfiler and WikiPathways
2.6 years ago by cfos4698 ★ 1.1k
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1
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3.2k
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Comment: Comment: PROKKA.gff file is not compatible with featureCounts
2.6 years ago by cfos4698 ★ 1.1k
1
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0
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2.1k
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Answer: Answer: command line - how to change name of multiple files at the same time
2.6 years ago by cfos4698 ★ 1.1k
0
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0
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849
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Answer: Answer: Extract species-specific SNPs from VCF files
2.6 years ago by cfos4698 ★ 1.1k
1
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0
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2.5k
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Comment: Comment: Issues With Using Singularity In Order To Run Software "quested access to the re
2.6 years ago by cfos4698 ★ 1.1k
1
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3.3k
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Comment: Comment: Error in reference fasta file when indexing with samtools
2.6 years ago by cfos4698 ★ 1.1k
2
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1
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3.3k
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Comment: Comment: Error in reference fasta file when indexing with samtools
2.7 years ago by cfos4698 ★ 1.1k
0
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0
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1.8k
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Comment: Comment: Not returning any alleles when using bcftools view -q
3.3 years ago by cfos4698 ★ 1.1k
0
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1
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1.8k
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Answer: Answer: Not returning any alleles when using bcftools view -q
3.3 years ago by cfos4698 ★ 1.1k
2
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1
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2.5k
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Answer: Answer: Errors loading in a treefile using ETE3
3.5 years ago by cfos4698 ★ 1.1k
0
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0
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2.1k
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Answer: Answer: How can I trim the primer and mask it with the original primer sequences?
3.6 years ago by cfos4698 ★ 1.1k
0
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0
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1.4k
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Comment: Comment: Sickle is giving empty trimmed file
3.6 years ago by cfos4698 ★ 1.1k
0
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0
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1.1k
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Answer: Answer: subset vcf to keep only samples heterozygous or homozygous for the alternate all
3.6 years ago by cfos4698 ★ 1.1k
2
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0
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1.4k
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Answer: Answer: Which is the file containing genome assembly?
3.6 years ago by cfos4698 ★ 1.1k
0
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1
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1.4k
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Comment: Comment: Running bigWigToWig using Anaconda in a Linux System
3.7 years ago by cfos4698 ★ 1.1k
1
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1
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1.9k
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Comment: Comment: Tools for pairwise sequence alignment
3.7 years ago by cfos4698 ★ 1.1k
0
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0
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2.9k
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Answer: Answer: Command-line alternative to Geneious assemble for Sanger sequencing data
3.8 years ago by cfos4698 ★ 1.1k
0
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1
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1.3k
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Answer: Answer: SnpEff does not create htmlStats
3.8 years ago by cfos4698 ★ 1.1k
4
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0
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2.9k
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Answer: Answer: a question about using Enrichr
3.8 years ago by cfos4698 ★ 1.1k
0
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0
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1.2k
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Answer: Answer: help with filtering sequences to make a phylogenetic tree
3.8 years ago by cfos4698 ★ 1.1k
0
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0
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1.1k
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Comment: Comment: Age nodes in R
3.8 years ago by cfos4698 ★ 1.1k
0
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1
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4.5k
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Comment: Comment: Snakemake Megahit error
3.8 years ago by cfos4698 ★ 1.1k
0
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0
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10k
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Comment: Comment: MinKNOW (guppy) not having the permission to basecall or demultiplex from a diff
3.9 years ago by cfos4698 ★ 1.1k
1
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1
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3.2k
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Comment: Comment: Functional profiling visualization enrichplot error: NAs introduced by coercion
3.9 years ago by cfos4698 ★ 1.1k
0
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1
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3.2k
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Comment: Comment: Functional profiling visualization enrichplot error: NAs introduced by coercion
3.9 years ago by cfos4698 ★ 1.1k
0
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0
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1.6k
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Comment: Comment: Spike protein sequences for COVID-19 variants
3.9 years ago by cfos4698 ★ 1.1k
2
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1
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1.6k
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Answer: Answer: Spike protein sequences for COVID-19 variants
3.9 years ago by cfos4698 ★ 1.1k
3
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1
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4.3k
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Answer: Answer: Bam file depth of coverage and statstics
3.9 years ago by cfos4698 ★ 1.1k
1
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1
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3.0k
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Comment: Comment: GO enrichment analysis with clusterProfiler
3.9 years ago by cfos4698 ★ 1.1k
1
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1
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3.0k
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Answer: Answer: GO enrichment analysis with clusterProfiler
3.9 years ago by cfos4698 ★ 1.1k
2
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1
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3.2k
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Answer: Answer: Noob: Help writing this shell for salmon quantification?
3.9 years ago by cfos4698 ★ 1.1k
1
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1
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4.0k
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Answer: Answer: kegg IDs to pathways in R
3.9 years ago by cfos4698 ★ 1.1k
0
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1
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2.7k
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Comment: Comment: How to run MLST with multiple fastq files
3.9 years ago by cfos4698 ★ 1.1k
0
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1
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2.7k
views
Comment: Comment: How to run MLST with multiple fastq files
3.9 years ago by cfos4698 ★ 1.1k
1
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1
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2.7k
views
Answer: Answer: How to run MLST with multiple fastq files
3.9 years ago by cfos4698 ★ 1.1k
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