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Answer: Answer: Problem with Newick format - ggtree in R
11 weeks ago by cfos4698 ★ 1.1k
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0
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565
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Answer: Answer: snippy error
3 months ago by cfos4698 ★ 1.1k
0
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0
replies
585
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Comment: Comment: RNA seq for non-model species
3 months ago by cfos4698 ★ 1.1k
2
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0
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616
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Comment: Comment: Why is local BLAST so slow? (yet another one of these questions)
3 months ago by cfos4698 ★ 1.1k
0
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1
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585
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Comment: Comment: RNA seq for non-model species
3 months ago by cfos4698 ★ 1.1k
2
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2
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585
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Answer: Answer: RNA seq for non-model species
3 months ago by cfos4698 ★ 1.1k
1
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1
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734
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Answer: Answer: Trimming nanopore reads
3 months ago by cfos4698 ★ 1.1k
0
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0
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2.5k
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Comment: Comment: Should I use the basecaller Dorado to analyze my Nanopore Data?
4 months ago by cfos4698 ★ 1.1k
2
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0
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594
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Answer: Answer: Importing modules based on python in bash script wont work
4 months ago by cfos4698 ★ 1.1k
0
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0
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459
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Comment: Comment: Alternative to Gentrome?
5 months ago by cfos4698 ★ 1.1k
0
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1
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383
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Answer: Answer: What is the best way to identify which group of genes is more highly expressed?
5 months ago by cfos4698 ★ 1.1k
3
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1
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1.2k
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Comment: Comment: UMAP or TSNE for single cells?
5 months ago by cfos4698 ★ 1.1k
1
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0
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491
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Answer: Answer: Kaiju database download
6 months ago by cfos4698 ★ 1.1k
0
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0
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435
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Answer: Answer: Comparative transcriptomics between species
6 months ago by cfos4698 ★ 1.1k
2
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0
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6.0k
views
Answer: Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by cfos4698 ★ 1.1k
1
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1
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1.5k
views
Comment: Comment: Automate the Splitting of a VCF File by Sample (bcftools)
7 months ago by cfos4698 ★ 1.1k
1
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0
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972
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Answer: Answer: What is the fastest nucleotide sequence alignment search tool for 100mer queries
8 months ago by cfos4698 ★ 1.1k
0
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0
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532
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Answer: Answer: Can vg stats -a be used on a bam file?
8 months ago by cfos4698 ★ 1.1k
1
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1
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947
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Answer: Answer: Found some plasmids in my sequence. IS there any tool or process by which i can
8 months ago by cfos4698 ★ 1.1k
0
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1
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1.5k
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Comment: Comment: Converting string to numerical in bcftools
8 months ago by cfos4698 ★ 1.1k
0
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0
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1.3k
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Comment: Comment: WGCNA Analysis - blockwiseModules data processing
8 months ago by cfos4698 ★ 1.1k
0
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1
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2.6k
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Comment: Comment: Cannot process all the reads in a fast5 file?
8 months ago by cfos4698 ★ 1.1k
0
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1
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956
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Answer: Answer: Align raw Nanopore reads (amplicon, long PCR)
8 months ago by cfos4698 ★ 1.1k
1
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0
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605
views
Answer: Answer: Can you convert ASCII text to fastq?
8 months ago by cfos4698 ★ 1.1k
0
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0
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391
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Answer: Answer: Measuring Evolutionary Distance Between Species from Chronogram
9 months ago by cfos4698 ★ 1.1k
0
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1
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834
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Answer: Answer: Extract Divergence Times and Corresponding Node Numbers from a Time Tree
9 months ago by cfos4698 ★ 1.1k
1
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1
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1.4k
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Clarification for bcftools consensus
bcftools vcf
9 months ago by cfos4698 ★ 1.1k
1
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0
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1.4k
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Answer: Answer: Clarification for bcftools consensus
9 months ago by cfos4698 ★ 1.1k
2
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1
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542
views
Answer: Answer: Phylogenetic tree visualization
9 months ago by cfos4698 ★ 1.1k
0
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1
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1.5k
views
Comment: Comment: Converting string to numerical in bcftools
9 months ago by cfos4698 ★ 1.1k
0
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1
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1.5k
views
Answer: Answer: Converting string to numerical in bcftools
10 months ago by cfos4698 ★ 1.1k
0
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1
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34k
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Comment: Comment: Generating consensus sequence from bam file
10 months ago by cfos4698 ★ 1.1k
1
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1
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3.5k
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Answer: Answer: Best tool for trimming and filtering nanopore direct RNA sequencing.
12 months ago by cfos4698 ★ 1.1k
1
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1
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1.6k
views
Comment: Comment: Help with error in snpEff command
12 months ago by cfos4698 ★ 1.1k
1
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1
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1.6k
views
Answer: Answer: Help with error in snpEff command
12 months ago by cfos4698 ★ 1.1k
0
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0
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2.3k
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Answer: Answer: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
12 months ago by cfos4698 ★ 1.1k
0
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1
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929
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Answer: Answer: Help with my fasta filter python scrips
12 months ago by cfos4698 ★ 1.1k
1
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0
replies
2.5k
views
Comment: Comment: bcftools isec output for multiple vcf files interpretations
12 months ago by cfos4698 ★ 1.1k
1
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1
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1.1k
views
Answer: Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
13 months ago by cfos4698 ★ 1.1k
2
votes
0
replies
2.5k
views
Answer: Answer: Snakemake vs Nextflow Upcoming bioinformatics Project
13 months ago by cfos4698 ★ 1.1k
1
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0
replies
2.1k
views
Comment: Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI
13 months ago by cfos4698 ★ 1.1k
1
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0
replies
819
views
Answer: Answer: Filtering VCF by specific tag in INFO field
14 months ago by cfos4698 ★ 1.1k
0
votes
1
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1.2k
views
Comment: Comment: Can not get bcftools norm to join biallelics into a multiallelic.
14 months ago by cfos4698 ★ 1.1k
3
votes
3
replies
792
views
Filtering of tricky overlapping sites in VCF
vcf bcftools
14 months ago by cfos4698 ★ 1.1k
0
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0
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792
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Answer: Answer: Filtering of tricky overlapping sites in VCF
14 months ago by cfos4698 ★ 1.1k
0
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0
replies
792
views
Comment: Comment: Filtering of tricky overlapping sites in VCF
14 months ago by cfos4698 ★ 1.1k
6
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0
replies
906
views
Answer: Answer: How to extract FASTA headers in R
14 months ago by cfos4698 ★ 1.1k
2
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1
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3.7k
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Comment: Comment: Conda is installing older version of Spades even though latest version is there
14 months ago by cfos4698 ★ 1.1k
0
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1
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5.0k
views
Comment: Comment: conda create env using .yml file leads to dependency conflicts
14 months ago by cfos4698 ★ 1.1k
0
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0
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5.0k
views
Comment: Comment: conda create env using .yml file leads to dependency conflicts
14 months ago by cfos4698 ★ 1.1k
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