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Answer: Answer: how to start
9 days ago by yura.grabovska ▴ 820
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8.9k
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Comment: Comment: UMAP QC
19 days ago by yura.grabovska ▴ 820
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508
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Comment: Comment: Help regarding quality control of 10X run?
5 weeks ago by yura.grabovska ▴ 820
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2.0k
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Comment: Comment: How do you clean GEO metadata before downstream analysis?
8 weeks ago by yura.grabovska ▴ 820
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2.0k
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Comment: Comment: How do you clean GEO metadata before downstream analysis?
8 weeks ago by yura.grabovska ▴ 820
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1.8k
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Comment: Comment: Tool to clean GEO metadata
8 weeks ago by yura.grabovska ▴ 820
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1
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2.0k
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Comment: Comment: DGE analysis in Seurat using paired samples per donor ?
8 weeks ago by yura.grabovska ▴ 820
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596
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Comment: Comment: How to add gene lable on GSEA plot
10 weeks ago by yura.grabovska ▴ 820
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1
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596
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Comment: Comment: How to add gene lable on GSEA plot
10 weeks ago by yura.grabovska ▴ 820
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1
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2.0k
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Answer: Answer: DGE analysis in Seurat using paired samples per donor ?
10 weeks ago by yura.grabovska ▴ 820
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0
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598
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Comment: Comment: Comparing sets of genes for similarity
3 months ago by yura.grabovska ▴ 820
1
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2
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598
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Comparing sets of genes for similarity
R jaccard genes marker clustering
3 months ago by yura.grabovska ▴ 820
1
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688
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Answer: Answer: Why is this interaction result not significant in DESeq2
4 months ago by yura.grabovska ▴ 820
1
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698
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Answer: Answer: Choosing the best clustering method for a certain methylation data
5 months ago by yura.grabovska ▴ 820
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954
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Comment: Comment: How to Make Cell Order identical Between Two Seurat Objects in R?
5 months ago by yura.grabovska ▴ 820
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1
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954
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Comment: Comment: How to Make Cell Order identical Between Two Seurat Objects in R?
5 months ago by yura.grabovska ▴ 820
1
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1
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954
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Answer: Answer: How to Make Cell Order identical Between Two Seurat Objects in R?
5 months ago by yura.grabovska ▴ 820
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761
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Comment: Comment: Methylation cpg probes annotation
6 months ago by yura.grabovska ▴ 820
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458
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cNMF missing spectra iterations - what am I doing wrong?
cNMF python single-cell
6 months ago by yura.grabovska ▴ 820
1
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660
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Answer: Answer: Impact of the number of PCs on the clustering in scRNA seq
6 months ago by yura.grabovska ▴ 820
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538
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Answer: Answer: Installing vg on Mac failed due to "Could not find libomp"
6 months ago by yura.grabovska ▴ 820
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1
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549
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Current best practice for alignment and quantification for downstream analysis in DESeq2
R DESeq2 alignment
updated 6 months ago by 105k • written 6 months ago by ▴ 820
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1.0k
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Comment: Comment: What is best way to do CNV Analysis on Xenium data (Spatial transcriptomics)?
6 months ago by yura.grabovska ▴ 820
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Answer: Answer: What is best way to do CNV Analysis on Xenium data (Spatial transcriptomics)?
6 months ago by yura.grabovska ▴ 820
0
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1
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888
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Answer: Answer: P-value calculation between groups in split violin plot
6 months ago by yura.grabovska ▴ 820
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2
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895
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After doublet detection in 10x scRNA-Seq data, there is still evidence of doublets
R DoubletFinder Seurat scRNA
updated 6 months ago by ★ 1.7k • written 6 months ago by ▴ 820
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1
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2.5k
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Comment: Comment: R CytoTRACE2 Results: Potency Score of Naive B Cells Lower Than Memory B and Pla
6 months ago by yura.grabovska ▴ 820
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774
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Answer: Answer: Should I Use p-value or Adjusted p-value for Differential Methylation Analysis (
7 months ago by yura.grabovska ▴ 820
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1
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1.1k
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Answer: Answer: Annotating Illumna epic probes
7 months ago by yura.grabovska ▴ 820
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500
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Answer: Answer: ScaleData not saving into SCE object
7 months ago by yura.grabovska ▴ 820
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727
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Answer: Answer: High adj. p-value/FDR despite large FC and high expression levels
7 months ago by yura.grabovska ▴ 820
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1
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1.2k
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Comment: Comment: 'Model matrix not full rank'
7 months ago by yura.grabovska ▴ 820
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0
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741
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Comment: Comment: File h5ad for SEVtras
7 months ago by yura.grabovska ▴ 820
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1
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741
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Comment: Comment: File h5ad for SEVtras
7 months ago by yura.grabovska ▴ 820
0
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866
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Answer: Answer: inserting Normalized count data
8 months ago by yura.grabovska ▴ 820
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1.6k
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Comment: Comment: Single-cell dimensionality reduction and clustering
9 months ago by yura.grabovska ▴ 820
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1.8k
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Answer: Answer: Error in conversion of ensembl to gene names
9 months ago by yura.grabovska ▴ 820
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0
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1.5k
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Comment: Comment: Seurat Mito Prefix Removed from Features
9 months ago by yura.grabovska ▴ 820
0
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1
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1.5k
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Answer: Answer: Seurat Mito Prefix Removed from Features
9 months ago by yura.grabovska ▴ 820
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0
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673
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Answer: Answer: Is there a way to write a genbank file in R?
9 months ago by yura.grabovska ▴ 820
0
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0
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546
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Answer: Answer: Help using enricher function from clusterProfiler
9 months ago by yura.grabovska ▴ 820
1
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0
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691
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Comment: Comment: How to retain interactive plots from Glimma in R Markdown HTML Document
9 months ago by yura.grabovska ▴ 820
1
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1
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691
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Comment: Comment: How to retain interactive plots from Glimma in R Markdown HTML Document
9 months ago by yura.grabovska ▴ 820
0
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1
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805
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Comment: Comment: New scRNA-seq analysis software - Web-base - No coding needed
9 months ago by yura.grabovska ▴ 820
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461
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Seurat/Signac multiome analysis filtering on nCounts instead of nFeatures
10x Signac Seurat multiome
9 months ago by yura.grabovska ▴ 820
0
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1
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2.1k
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Answer: Answer: What is the difference between the SCT data stored in data and scale.data in Seu
9 months ago by yura.grabovska ▴ 820
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1.2k
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Comment: Comment: best practices for integrating
9 months ago by yura.grabovska ▴ 820
0
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1
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1.7k
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Comment: Comment: Could Anyone Help Me with Seurat code
9 months ago by yura.grabovska ▴ 820
0
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1
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752
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Comment: Comment: Unable to link peaks to genes for multiomics data
9 months ago by yura.grabovska ▴ 820
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0
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1.0k
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Comment: Comment: Need help with fgsea
9 months ago by yura.grabovska ▴ 820
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