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Answer:
Answer: fail to download data from seurat
5 days ago by
yura.grabovska
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321
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Answer: getMappedEntrezIDs from missmethyl package R
15 days ago by
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241
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Answer: Appropriate minimum gene set size for gene set enrichment analysis
24 days ago by
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Answer: cnvpytor run problem
25 days ago by
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Answer: PCA for count data
25 days ago by
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363
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Answer: GSVA with a genelist on a "per-cluster" basis
4 weeks ago by
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371
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Answer: Using scRNA-seq to draw concrete evidence about transitional cluster
5 weeks ago by
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712
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Answer: Error in pheatmap 'Error in hclust(d, method = method) : must have n >= 2 object
5 weeks ago by
yura.grabovska
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229
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Answer:
Answer: filter genes for differential gene expression
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533
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Answer:
Answer: Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevan
8 weeks ago by
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Answer: Can't reproduce harmony results in Seurat
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570
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Answer: Weird outcomes from employing NMF on scRNA-seq data
8 weeks ago by
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Answer: Statistics of methylation experiments
8 weeks ago by
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381
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Answer:
Answer: Using findmarker of seurat with different test.use but getting the same resulat.
10 weeks ago by
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453
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Answer:
Answer: Integration of scRNA-seq datasets from different tissues
3 months ago by
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658
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Answer: How to Read .CEL files in R-studio?
3 months ago by
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415
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Answer:
Answer: Help with heatmaps
3 months ago by
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712
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Answer:
Answer: scRNA-seq: Do people eliminate housekeeping genes for the sake of increasing alg
4 months ago by
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533
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Answer:
Answer: Issue with converting Affy IDs to gene IDs/symbols
4 months ago by
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473
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Answer:
Answer: adjusting pheatmap based on common genes
4 months ago by
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734
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Answer:
Answer: Differential analysis of enrichment results
4 months ago by
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597
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Answer: Change the layout of the Venn diagram
4 months ago by
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378
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Answer: Help with complex Volcano Plot
4 months ago by
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429
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Answer:
Answer: Findind the annotation file of the Illumina Infinium HumanMethylation450k array
4 months ago by
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810
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Answer:
Answer: Before doing pseudobulk, should we get rid of genes that are only expressed in a
4 months ago by
yura.grabovska
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360
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Answer:
Answer: Statistical test or method to test relationship between nearby genes and CpG sit
4 months ago by
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448
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Answer: Merged analysis of microarray datasets using R
4 months ago by
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1.0k
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Answer:
Answer: Filtering seurat object
4 months ago by
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646
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Answer:
Answer: Calling variants/SNP for single-cell RNA-seq data
4 months ago by
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1.2k
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Answer:
Answer: Errors with GSEA using clusterProfiler
4 months ago by
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359
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Answer:
Answer: Pathway and associated gene coordinates
4 months ago by
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1.2k
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Answer:
Answer: Errors with GSEA using clusterProfiler
4 months ago by
yura.grabovska
▴ 600
3
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605
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Answer:
Answer: Open the Seurat count matrix in RStudio
4 months ago by
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329
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Answer:
Answer: GSVA Setup
4 months ago by
yura.grabovska
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418
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Answer:
Answer: RNA seq
updated 5 months ago by
Ram
44k • written 5 months ago by
yura.grabovska
▴ 600
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617
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Answer:
Answer: Can 5' and 3' scRNAseq be processed with the same pipeline?
5 months ago by
yura.grabovska
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2.3k
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Answer:
Answer: Confusing results from FindConservedMarkers in Seurat
11 months ago by
yura.grabovska
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668
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Answer:
Answer: Extracting GSEA gene rankings from gseaResult object
11 months ago by
yura.grabovska
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0
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705
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Answer:
Answer: boxplot issue
updated 19 months ago by
Ram
44k • written 19 months ago by
yura.grabovska
▴ 600
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656
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Answer:
Answer: heatmap issue
19 months ago by
yura.grabovska
▴ 600
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2.5k
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Answer:
A: minfi out of band probes
7.4 years ago by
yura.grabovska
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