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Answer: Answer: ROSE called super-enhancers overlapping with promoters
20 months ago by jared.andrews07 ★ 19k
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2.8k
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Comment: Comment: Hello, I have differential ATAC-seq from control and diseased cells (H3K27ac mar
20 months ago by jared.andrews07 ★ 19k
2
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Comment: Comment: best pipeline for Paired scATAC-seq and scRNA-seq in the same cell - bioinformat
20 months ago by jared.andrews07 ★ 19k
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Comment: Comment: No tumour cells in clustering of tumor sample?!
20 months ago by jared.andrews07 ★ 19k
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1.4k
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Comment: Comment: No tumour cells in clustering of tumor sample?!
20 months ago by jared.andrews07 ★ 19k
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Comment: Comment: Bulk RNA-seq: Different Expression Analysis with DEseq2
20 months ago by jared.andrews07 ★ 19k
2
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1.4k
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Answer: Answer: No tumour cells in clustering of tumor sample?!
20 months ago by jared.andrews07 ★ 19k
2
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2
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1.8k
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Answer: Answer: Seurat Analysis: Deleting cells from seurat object
20 months ago by jared.andrews07 ★ 19k
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1
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15k
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Comment: Comment: For CreateSeuratObject, Where Do the Values for min.cells and min.features come
20 months ago by jared.andrews07 ★ 19k
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1.8k
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Comment: Comment: DESeq2 heatmap with low baseMean values
20 months ago by jared.andrews07 ★ 19k
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2.4k
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Comment: Comment: Batch and Sample correction for downstream analysis using DESeq2
21 months ago by jared.andrews07 ★ 19k
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2.4k
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Comment: Comment: Batch and Sample correction for downstream analysis using DESeq2
21 months ago by jared.andrews07 ★ 19k
1
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1
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2.4k
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Comment: Comment: Batch and Sample correction for downstream analysis using DESeq2
21 months ago by jared.andrews07 ★ 19k
2
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1
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2.1k
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Answer: Answer: RNA Contamination Tool for Developing Cell Samples
21 months ago by jared.andrews07 ★ 19k
1
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2.4k
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Answer: Answer: Batch and Sample correction for downstream analysis using DESeq2
21 months ago by jared.andrews07 ★ 19k
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1.2k
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Comment: Comment: Single cell visulaisation webtool
21 months ago by jared.andrews07 ★ 19k
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2.2k
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Comment: Comment: R ComplexHeatmap - Adujusting the cell size in heatmap
21 months ago by jared.andrews07 ★ 19k
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0
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1.1k
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Answer: Answer: Website or tool to obtain a list of genes that participate in a specific process
21 months ago by jared.andrews07 ★ 19k
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1
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1.8k
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Answer: Answer: Ambient RNA removal method that generates whole (integer) counts
21 months ago by jared.andrews07 ★ 19k
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1.1k
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Answer: Answer: RNA-seq log2 fold change to linear
21 months ago by jared.andrews07 ★ 19k
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3.1k
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Comment: Comment: mouse+human cells in 10x scRNA-seq
21 months ago by jared.andrews07 ★ 19k
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878
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Answer: Answer: What type of cancer did they study in this paper?
21 months ago by jared.andrews07 ★ 19k
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1.5k
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Comment: Comment: Calculation of ChIP-seq normalization factors with non-conventional spike-in ass
22 months ago by jared.andrews07 ★ 19k
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1.5k
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Comment: Comment: Calculation of ChIP-seq normalization factors with non-conventional spike-in ass
22 months ago by jared.andrews07 ★ 19k
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4
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1.5k
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Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
DiffBind csaw normalization spikein ChIPseq
22 months ago by jared.andrews07 ★ 19k
2
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1
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2.2k
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Answer: Answer: Doheatmap in seurat
22 months ago by jared.andrews07 ★ 19k
2
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1
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1.1k
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Answer: Answer: DepMap Portal
23 months ago by jared.andrews07 ★ 19k
2
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1
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3.4k
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Answer: Answer: How to remove the default title to a DimPlot() splitted into two by group.by ?
23 months ago by jared.andrews07 ★ 19k
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0
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1.2k
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Comment: Comment: macs2 output r file not generated
23 months ago by jared.andrews07 ★ 19k
2
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1.2k
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Answer: Answer: macs2 output r file not generated
23 months ago by jared.andrews07 ★ 19k
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1.1k
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Answer: Answer: Visium data analysis software supporting deconvolution analysis
23 months ago by jared.andrews07 ★ 19k
0
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0
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672
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Comment: Comment: I'm doing RNA seq but the quality control sequence GC contens shape looks weird.
23 months ago by jared.andrews07 ★ 19k
3
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2.6k
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Answer: Answer: Mentor for a beginner bioinformatics student
23 months ago by jared.andrews07 ★ 19k
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1.1k
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Comment: Comment: 2 dimensional quadrant plot
23 months ago by jared.andrews07 ★ 19k
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1
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2.7k
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Comment: Comment: ROSE Algorithm: index out of range
23 months ago by jared.andrews07 ★ 19k
1
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0
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15k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
23 months ago by jared.andrews07 ★ 19k
1
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1
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15k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
23 months ago by jared.andrews07 ★ 19k
0
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0
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15k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
23 months ago by jared.andrews07 ★ 19k
1
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0
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1.1k
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Comment: Comment: Chip-Seq and correlation of bam file
23 months ago by jared.andrews07 ★ 19k
2
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1
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1.1k
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Answer: Answer: Chip-Seq and correlation of bam file
23 months ago by jared.andrews07 ★ 19k
1
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0
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648
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Answer: Answer: Transcription factor co-localization p-values
23 months ago by jared.andrews07 ★ 19k
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0
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2.0k
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Comment: Comment: Filter human transcription factors
24 months ago by jared.andrews07 ★ 19k
6
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2.0k
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Answer: Answer: Filter transcription factors
24 months ago by jared.andrews07 ★ 19k
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0
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3.4k
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Comment: Comment: scRNAseq Differential expression analysis
24 months ago by jared.andrews07 ★ 19k
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1
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1.4k
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Answer: Answer: GSEA Result Visualization in R
24 months ago by jared.andrews07 ★ 19k
9
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1
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5.8k
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Comment: Comment: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
2.0 years ago by jared.andrews07 ★ 19k
1
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1
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1.8k
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Comment: Comment: Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATA
2.0 years ago by jared.andrews07 ★ 19k
0
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1
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1.8k
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Comment: Comment: Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATA
2.0 years ago by jared.andrews07 ★ 19k
1
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0
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1.5k
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Answer: Answer: trajectory-like graph for a data frame
2.0 years ago by jared.andrews07 ★ 19k
1
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1
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4.9k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
2.0 years ago by jared.andrews07 ★ 19k
1,663 results • Page 6 of 34
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