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Comment: Comment: Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATA
2.1 years ago by jared.andrews07 ★ 19k
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Answer: Answer: trajectory-like graph for a data frame
2.1 years ago by jared.andrews07 ★ 19k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
2.2 years ago by jared.andrews07 ★ 19k
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Comment: Comment: Joint RNA and ATAC analysis: 10x multiomic - Fragment Path
2.2 years ago by jared.andrews07 ★ 19k
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Answer: Answer: Joint RNA and ATAC analysis: 10x multiomic - Fragment Path
2.2 years ago by jared.andrews07 ★ 19k
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Comment: Comment: Cluster annotation in single cell
2.2 years ago by jared.andrews07 ★ 19k
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Comment: Comment: How to remove the gene label in heatmap RNA-seq
2.2 years ago by jared.andrews07 ★ 19k
3
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3.0k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
2.2 years ago by jared.andrews07 ★ 19k
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1.1k
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Answer: Answer: how to filter the scRNAseq data, by percent genes expression, counts and others
2.2 years ago by jared.andrews07 ★ 19k
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Comment: Comment: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
2.2 years ago by jared.andrews07 ★ 19k
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3.1k
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Comment: Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
2.2 years ago by jared.andrews07 ★ 19k
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2.3k
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Comment: Comment: R based query about making pairwise matrix
2.2 years ago by jared.andrews07 ★ 19k
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2.3k
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Answer: Answer: R based query about making pairwise matrix
2.2 years ago by jared.andrews07 ★ 19k
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2
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2.0k
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Answer: Answer: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
2.2 years ago by jared.andrews07 ★ 19k
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8.5k
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Answer: Answer: InferCNV results interpretation
2.2 years ago by jared.andrews07 ★ 19k
2
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2
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3.1k
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Answer: Answer: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
updated 2.2 years ago by 45k • written 2.2 years ago by ★ 19k
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Comment: Comment: open source projects looking for contributors
2.2 years ago by jared.andrews07 ★ 19k
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2.2k
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Comment: Comment: open source projects looking for contributors
2.2 years ago by jared.andrews07 ★ 19k
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733
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Answer: Answer: DESeq2 design formula for time - condition - donor
2.2 years ago by jared.andrews07 ★ 19k
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3.4k
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Comment: Comment: Differential Expression using Isoseq-supplemented reference transcriptome
2.2 years ago by jared.andrews07 ★ 19k
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3.4k
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Comment: Comment: Problems using ERCC spike-ins for normalization in DESeq2
2.2 years ago by jared.andrews07 ★ 19k
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0
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3.1k
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Answer: Answer: Is Bioinformatics a Professional Degree?
2.2 years ago by jared.andrews07 ★ 19k
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2.2k
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Comment: Comment: open source projects looking for contributors
2.2 years ago by jared.andrews07 ★ 19k
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1.7k
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Comment: Comment: Biostar as a next generation version
2.2 years ago by jared.andrews07 ★ 19k
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Answer: Answer: A cluster expresses two types of cells' markers in scRNA-seq
2.2 years ago by jared.andrews07 ★ 19k
4
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2
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3.4k
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Answer: Answer: Problems using ERCC spike-ins for normalization in DESeq2
2.2 years ago by jared.andrews07 ★ 19k
2
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0
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1.6k
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Comment: Comment: Load MF, CC and BP from org.Hs.eg.db
2.2 years ago by jared.andrews07 ★ 19k
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1.6k
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Answer: Answer: Load MF, CC and BP from org.Hs.eg.db
updated 2.2 years ago by 45k • written 2.2 years ago by ★ 19k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
2.2 years ago by jared.andrews07 ★ 19k
1
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0
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1.5k
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Answer: Answer: How to loop over certain files within a directory that belongs to certain sample
2.2 years ago by jared.andrews07 ★ 19k
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2
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5.2k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
2.2 years ago by jared.andrews07 ★ 19k
1
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0
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5.2k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
2.2 years ago by jared.andrews07 ★ 19k
3
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4
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5.2k
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Answer: Answer: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
2.2 years ago by jared.andrews07 ★ 19k
0
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1
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907
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Answer: Answer: About batch effect in separate library preparation for multiple samples tested o
2.2 years ago by jared.andrews07 ★ 19k
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0
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949
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Answer: Answer: Bioinformatics Workflow
2.2 years ago by jared.andrews07 ★ 19k
0
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0
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1.6k
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Comment: Comment: Error with plot functions: Graphic API version mismatch
2.2 years ago by jared.andrews07 ★ 19k
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0
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3.6k
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Answer: Answer: Choosing a cut-off for mitochondrial genes in brain scRNAseq
2.2 years ago by jared.andrews07 ★ 19k
0
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0
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2.0k
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Comment: Comment: CNA score calculation per cell
2.2 years ago by jared.andrews07 ★ 19k
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2.0k
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Comment: Comment: CNA score calculation per cell
2.2 years ago by jared.andrews07 ★ 19k
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0
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1.3k
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Answer: Answer: circular heatmap in R Shiny
updated 2.2 years ago by 45k • written 2.2 years ago by ★ 19k
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0
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1.4k
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Answer: Answer: Cell Barcode Identification and Counting
updated 2.2 years ago by 45k • written 2.2 years ago by ★ 19k
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Answer: Answer: CNA score calculation per cell
2.2 years ago by jared.andrews07 ★ 19k
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1
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2.1k
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Comment: Comment: How to get a list of gene names from macs2 peaks
2.2 years ago by jared.andrews07 ★ 19k
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2.1k
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Answer: Answer: How to get a list of gene names from macs2 peaks
2.2 years ago by jared.andrews07 ★ 19k
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0
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1.2k
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Comment: Comment: DiffBind error: No contrasts added. There must be at least two sample groups wit
2.2 years ago by jared.andrews07 ★ 19k
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1
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1.4k
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Answer: Answer: identify cell of origin from bulk RNAseq data
2.2 years ago by jared.andrews07 ★ 19k
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1
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1.2k
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Answer: Answer: DiffBind error: No contrasts added. There must be at least two sample groups wit
2.2 years ago by jared.andrews07 ★ 19k
0
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1
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3.2k
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Answer: Answer: gseGO() --> No gene can be mapped
2.2 years ago by jared.andrews07 ★ 19k
3
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1
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3.8k
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Answer: Answer: How to write a review article in bioinformatics
2.2 years ago by jared.andrews07 ★ 19k
2
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0
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1.1k
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Answer: Answer: Neuronal markers are expressed in all cell types in 10X single-cell RNASeq
2.3 years ago by jared.andrews07 ★ 19k
1,666 results • Page 7 of 34
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