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Answer: Answer: General questions concerning mathylation analysis
2.7 years ago by jared.andrews07 ★ 19k
0
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0
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8.9k
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Comment: Comment: CUT&Tag data processing: peak caller choice and typical peak size profile
2.7 years ago by jared.andrews07 ★ 19k
1
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3
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8.9k
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Answer: Answer: CUT&Tag data processing: peak caller choice and typical peak size profile
2.7 years ago by jared.andrews07 ★ 19k
2
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0
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1.0k
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Answer: Answer: Analyzing time-series RNA-seq data using DEseq2
2.8 years ago by jared.andrews07 ★ 19k
2
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2
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2.5k
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Answer: Answer: How to interpret the nine-square plot from mageckFlute
2.8 years ago by jared.andrews07 ★ 19k
0
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0
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3.6k
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Comment: Comment: How do I know if I'm overcorrecting my single cell data
2.8 years ago by jared.andrews07 ★ 19k
2
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0
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1.1k
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Answer: Answer: ENCODE peaks files - do I use the IDR files?
2.8 years ago by jared.andrews07 ★ 19k
0
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0
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2.1k
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Answer: Answer: EdgeR installation in Mac 1 Pro (M1 chip) using Studio
2.8 years ago by jared.andrews07 ★ 19k
3
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1
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1.8k
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Answer: Answer: Subsetting DGEList object for for a list of genes of interest
2.9 years ago by jared.andrews07 ★ 19k
3
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0
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3.9k
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Answer: Answer: How to resolve conda package conflicts when I try to build an environment for NL
2.9 years ago by jared.andrews07 ★ 19k
1
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1
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3.6k
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Answer: Answer: How do I know if I'm overcorrecting my single cell data
2.9 years ago by jared.andrews07 ★ 19k
3
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1
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3.9k
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Answer: Answer: Searching for a way to plot Seurat style equivalent dotplot for gene expression
2.9 years ago by jared.andrews07 ★ 19k
0
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0
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841
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Answer: Answer: Adjusting batch effects for known cell types and applying this transformation to
2.9 years ago by jared.andrews07 ★ 19k
0
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0
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755
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Comment: Comment: Error using methylumi.bgcorr for processing of Illumina array data
2.9 years ago by jared.andrews07 ★ 19k
2
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1
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3.0k
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Answer: Answer: How to open/work with wig or tdf files
2.9 years ago by jared.andrews07 ★ 19k
1
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0
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1.9k
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Comment: Comment: Exon counts do not match gene and transcript counts
2.9 years ago by jared.andrews07 ★ 19k
1
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1
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3.1k
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Comment: Comment: No DEGs (adjP 0.99) but GSEA has significant adj p values and enriched pathways
2.9 years ago by jared.andrews07 ★ 19k
4
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1
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3.1k
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Answer: Answer: No DEGs (adjP 0.99) but GSEA has significant adj p values and enriched pathways
3.0 years ago by jared.andrews07 ★ 19k
0
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1
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3.1k
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Comment: Comment: mouse+human cells in 10x scRNA-seq
3.0 years ago by jared.andrews07 ★ 19k
0
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1
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3.1k
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Comment: Comment: mouse+human cells in 10x scRNA-seq
3.0 years ago by jared.andrews07 ★ 19k
2
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1
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3.1k
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Answer: Answer: mouse+human cells in 10x scRNA-seq
3.0 years ago by jared.andrews07 ★ 19k
0
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1
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810
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Comment: Comment: moving .txt file to desktop
3.0 years ago by jared.andrews07 ★ 19k
0
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0
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2.4k
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Comment: Comment: Same results in Limma Toptable as in DESEQ2 results
3.0 years ago by jared.andrews07 ★ 19k
3
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1
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2.4k
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Comment: Comment: Same results in Limma Toptable as in DESEQ2 results
3.0 years ago by jared.andrews07 ★ 19k
1
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0
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3.3k
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Answer: Answer: How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
3.0 years ago by jared.andrews07 ★ 19k
0
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1
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1.5k
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Answer: Answer: Help with plotting DEG-specific heatmap
3.0 years ago by jared.andrews07 ★ 19k
0
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1
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1.1k
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Comment: Comment: How to shade columns for dataframe in ggplot that has 2 dataframes?
3.0 years ago by jared.andrews07 ★ 19k
3
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1
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942
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Answer: Answer: Why we perform coldata dataframe in normalization with DESeq2 on R?
3.0 years ago by jared.andrews07 ★ 19k
1
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0
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5.3k
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Comment: Comment: Commercial software for genomics / NGS / bioinformatics
3.0 years ago by jared.andrews07 ★ 19k
1
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0
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1.7k
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Comment: Comment: Number of cells in each clusters
3.0 years ago by jared.andrews07 ★ 19k
1
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1
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1.7k
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Answer: Answer: Number of cells in each clusters
3.0 years ago by jared.andrews07 ★ 19k
1
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1
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2.5k
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Comment: Comment: Obtaining p-value and fold-change from a table
3.1 years ago by jared.andrews07 ★ 19k
3
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1
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2.5k
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Answer: Answer: Obtaining p-value and fold-change from a table
3.1 years ago by jared.andrews07 ★ 19k
0
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1
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2.5k
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Answer: Answer: Normalize Bimodal Distribution
3.1 years ago by jared.andrews07 ★ 19k
2
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1
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1.6k
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Answer: Answer: Relative log expression normalization without negative values
3.1 years ago by jared.andrews07 ★ 19k
2
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0
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4.4k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3.1 years ago by jared.andrews07 ★ 19k
4
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1
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4.4k
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Answer: Answer: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3.1 years ago by jared.andrews07 ★ 19k
0
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1
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2.9k
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Comment: Comment: DESeq2 dds Creation
3.1 years ago by jared.andrews07 ★ 19k
1
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2
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1.9k
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Comment: Comment: STARsolo detected only one gene and Features.tsv file is empty
3.1 years ago by jared.andrews07 ★ 19k
1
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0
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1.2k
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Answer: Answer: Clustering analysis for scRNA-seq
3.1 years ago by jared.andrews07 ★ 19k
1
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1
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1.3k
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Comment: Comment: Error in DiffBind
3.2 years ago by jared.andrews07 ★ 19k
1
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1
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6.0k
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Comment: Comment: Cut&Run vs ChIP-seq pipeline
3.2 years ago by jared.andrews07 ★ 19k
0
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0
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1.4k
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Comment: Comment: Logfold change
3.2 years ago by jared.andrews07 ★ 19k
1
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2
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1.4k
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Answer: Answer: Logfold change
3.2 years ago by jared.andrews07 ★ 19k
0
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0
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1.8k
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Comment: Comment: Exploring batch effects in RNA-seq data with plotPCA
3.2 years ago by jared.andrews07 ★ 19k
1
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1
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1.8k
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Answer: Answer: Exploring batch effects in RNA-seq data with plotPCA
3.2 years ago by jared.andrews07 ★ 19k
1
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0
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2.2k
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Answer: Answer: RNA-seq Heatmaps based off pathways
3.2 years ago by jared.andrews07 ★ 19k
0
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0
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1.7k
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Comment: Comment: interpretation of CNVKIT plot
3.2 years ago by jared.andrews07 ★ 19k
3
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1
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4.8k
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Answer: Answer: What is the command to download GTF from NCBI
3.2 years ago by jared.andrews07 ★ 19k
1
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0
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719
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Answer: Answer: How to do differential expressions in R from scRNAseq count files after scaling
3.2 years ago by jared.andrews07 ★ 19k
1,663 results • Page 9 of 34
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