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Answer: Answer: Visualize pathways from MSigDB
20 days ago by jared.andrews07 ★ 16k
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1
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219
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Answer: Answer: Update R in Posit Workbench
29 days ago by jared.andrews07 ★ 16k
1
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0
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202
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Answer: Answer: Seeking for edgeR TMM Normalization calcul example
5 weeks ago by jared.andrews07 ★ 16k
0
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1
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445
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Answer: Answer: Error when trying to install R package 'scater'
5 weeks ago by jared.andrews07 ★ 16k
1
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0
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207
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Answer: Answer: Seurat 5 integration
5 weeks ago by jared.andrews07 ★ 16k
2
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1
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667
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Answer: Answer: Bioinformatics career transition
6 weeks ago by jared.andrews07 ★ 16k
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0
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246
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Answer: Answer: GENERAL R QUESTION: Accessing package versions of an old R object/project?
6 weeks ago by jared.andrews07 ★ 16k
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0
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328
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Answer: Answer: quality control scRNAseq
6 weeks ago by jared.andrews07 ★ 16k
2
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0
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354
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Answer: Answer: Demonstrating lack of difference between two peaksets
6 weeks ago by jared.andrews07 ★ 16k
1
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0
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270
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Answer: Answer: Huge TPM values in some tissues of an expression atlas
7 weeks ago by jared.andrews07 ★ 16k
2
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0
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369
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Answer: Answer: PCA plot analysis
8 weeks ago by jared.andrews07 ★ 16k
2
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1
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224
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Answer: Answer: Sample clustering from 10X single cell
9 weeks ago by jared.andrews07 ★ 16k
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0
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342
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Answer: Answer: How to add motifs in cellranger-arc reference?
9 weeks ago by jared.andrews07 ★ 16k
1
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0
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244
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Answer: Answer: Pseudo bulking of scATAC-seq
10 weeks ago by jared.andrews07 ★ 16k
1
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2
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564
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Answer: Answer: ROSE called super-enhancers overlapping with promoters
3 months ago by jared.andrews07 ★ 16k
2
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1
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652
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Answer: Answer: No tumour cells in clustering of tumor sample?!
3 months ago by jared.andrews07 ★ 16k
2
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2
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609
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Answer: Answer: Seurat Analysis: Deleting cells from seurat object
3 months ago by jared.andrews07 ★ 16k
2
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1
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1.0k
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Answer: Answer: RNA Contamination Tool for Developing Cell Samples
4 months ago by jared.andrews07 ★ 16k
1
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1
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904
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Answer: Answer: Batch and Sample correction for downstream analysis using DESeq2
4 months ago by jared.andrews07 ★ 16k
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0
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555
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Answer: Answer: Website or tool to obtain a list of genes that participate in a specific process
4 months ago by jared.andrews07 ★ 16k
4
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1
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580
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Answer: Answer: Ambient RNA removal method that generates whole (integer) counts
4 months ago by jared.andrews07 ★ 16k
1
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0
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505
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Answer: Answer: RNA-seq log2 fold change to linear
4 months ago by jared.andrews07 ★ 16k
1
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0
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383
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Answer: Answer: What type of cancer did they study in this paper?
4 months ago by jared.andrews07 ★ 16k
1
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1
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795
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Answer: Answer: Doheatmap in seurat
6 months ago by jared.andrews07 ★ 16k
2
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1
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433
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Answer: Answer: DepMap Portal
6 months ago by jared.andrews07 ★ 16k
1
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1
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923
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Answer: Answer: How to remove the default title to a DimPlot() splitted into two by group.by ?
6 months ago by jared.andrews07 ★ 16k
2
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1
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612
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Answer: Answer: macs2 output r file not generated
6 months ago by jared.andrews07 ★ 16k
0
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0
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502
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Answer: Answer: Visium data analysis software supporting deconvolution analysis
6 months ago by jared.andrews07 ★ 16k
3
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1
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1.4k
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Answer: Answer: Mentor for a beginner bioinformatics student
6 months ago by jared.andrews07 ★ 16k
2
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1
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645
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Answer: Answer: Chip-Seq and correlation of bam file
7 months ago by jared.andrews07 ★ 16k
1
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0
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373
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Answer: Answer: Transcription factor co-localization p-values
7 months ago by jared.andrews07 ★ 16k
6
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3
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901
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Answer: Answer: Filter transcription factors
7 months ago by jared.andrews07 ★ 16k
0
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1
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577
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Answer: Answer: GSEA Result Visualization in R
7 months ago by jared.andrews07 ★ 16k
1
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0
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791
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Answer: Answer: trajectory-like graph for a data frame
7 months ago by jared.andrews07 ★ 16k
0
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1
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734
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Answer: Answer: Joint RNA and ATAC analysis: 10x multiomic - Fragment Path
7 months ago by jared.andrews07 ★ 16k
3
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1
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1.1k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
7 months ago by jared.andrews07 ★ 16k
1
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1
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509
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Answer: Answer: how to filter the scRNAseq data, by percent genes expression, counts and others
7 months ago by jared.andrews07 ★ 16k
4
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0
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1.2k
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Answer: Answer: R based query about making pairwise matrix
7 months ago by jared.andrews07 ★ 16k
1
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2
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1.0k
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Answer: Answer: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
7 months ago by jared.andrews07 ★ 16k
0
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0
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2.3k
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Answer: Answer: InferCNV results interpretation
7 months ago by jared.andrews07 ★ 16k
2
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2
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1.4k
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Answer: Answer: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
updated 7 months ago by 43k • written 7 months ago by ★ 16k
1
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0
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393
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Answer: Answer: DESeq2 design formula for time - condition - donor
8 months ago by jared.andrews07 ★ 16k
0
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0
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1.4k
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Answer: Answer: Is Bioinformatics a Professional Degree?
8 months ago by jared.andrews07 ★ 16k
0
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1
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821
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Answer: Answer: A cluster expresses two types of cells' markers in scRNA-seq
8 months ago by jared.andrews07 ★ 16k
4
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2
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1.3k
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Answer: Answer: Problems using ERCC spike-ins for normalization in DESeq2
8 months ago by jared.andrews07 ★ 16k
1
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1
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736
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Answer: Answer: Load MF, CC and BP from org.Hs.eg.db
updated 8 months ago by 43k • written 8 months ago by ★ 16k
1
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0
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809
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Answer: Answer: How to loop over certain files within a directory that belongs to certain sample
8 months ago by jared.andrews07 ★ 16k
3
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3
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2.3k
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Answer: Answer: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
8 months ago by jared.andrews07 ★ 16k
0
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1
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449
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Answer: Answer: About batch effect in separate library preparation for multiple samples tested o
8 months ago by jared.andrews07 ★ 16k
1
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0
replies
516
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Answer: Answer: Bioinformatics Workflow
8 months ago by jared.andrews07 ★ 16k
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