Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
1
vote
1
reply
274
views
Answer: Answer: Using ggplotly in R
2 days ago by jared.andrews07 ★ 16k
10
votes
1
reply
324
views
Answer: Answer: TFs and Gene databases
9 days ago by jared.andrews07 ★ 16k
0
votes
0
replies
272
views
Answer: Answer: DiffBind: no peaks in DBA
14 days ago by jared.andrews07 ★ 16k
1
vote
0
replies
189
views
Answer: Answer: Super ehancers
14 days ago by jared.andrews07 ★ 16k
0
votes
0
replies
420
views
Answer: Answer: What purposes can TPM values be used for?
14 days ago by jared.andrews07 ★ 16k
2
votes
1
reply
354
views
Answer: Answer: Visualize pathways from MSigDB
5 weeks ago by jared.andrews07 ★ 16k
0
votes
1
reply
259
views
Answer: Answer: Update R in Posit Workbench
7 weeks ago by jared.andrews07 ★ 16k
1
vote
0
replies
218
views
Answer: Answer: Seeking for edgeR TMM Normalization calcul example
8 weeks ago by jared.andrews07 ★ 16k
0
votes
1
reply
506
views
Answer: Answer: Error when trying to install R package 'scater'
8 weeks ago by jared.andrews07 ★ 16k
1
vote
0
replies
225
views
Answer: Answer: Seurat 5 integration
8 weeks ago by jared.andrews07 ★ 16k
2
votes
1
reply
773
views
Answer: Answer: Bioinformatics career transition
9 weeks ago by jared.andrews07 ★ 16k
0
votes
0
replies
281
views
Answer: Answer: GENERAL R QUESTION: Accessing package versions of an old R object/project?
9 weeks ago by jared.andrews07 ★ 16k
1
vote
0
replies
353
views
Answer: Answer: quality control scRNAseq
9 weeks ago by jared.andrews07 ★ 16k
2
votes
0
replies
392
views
Answer: Answer: Demonstrating lack of difference between two peaksets
9 weeks ago by jared.andrews07 ★ 16k
1
vote
0
replies
291
views
Answer: Answer: Huge TPM values in some tissues of an expression atlas
10 weeks ago by jared.andrews07 ★ 16k
2
votes
0
replies
409
views
Answer: Answer: PCA plot analysis
11 weeks ago by jared.andrews07 ★ 16k
2
votes
1
reply
245
views
Answer: Answer: Sample clustering from 10X single cell
12 weeks ago by jared.andrews07 ★ 16k
0
votes
0
replies
400
views
Answer: Answer: How to add motifs in cellranger-arc reference?
12 weeks ago by jared.andrews07 ★ 16k
1
vote
0
replies
274
views
Answer: Answer: Pseudo bulking of scATAC-seq
3 months ago by jared.andrews07 ★ 16k
1
vote
2
replies
637
views
Answer: Answer: ROSE called super-enhancers overlapping with promoters
4 months ago by jared.andrews07 ★ 16k
2
votes
1
reply
709
views
Answer: Answer: No tumour cells in clustering of tumor sample?!
4 months ago by jared.andrews07 ★ 16k
2
votes
2
replies
666
views
Answer: Answer: Seurat Analysis: Deleting cells from seurat object
4 months ago by jared.andrews07 ★ 16k
2
votes
1
reply
1.1k
views
Answer: Answer: RNA Contamination Tool for Developing Cell Samples
5 months ago by jared.andrews07 ★ 16k
1
vote
1
reply
983
views
Answer: Answer: Batch and Sample correction for downstream analysis using DESeq2
5 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
591
views
Answer: Answer: Website or tool to obtain a list of genes that participate in a specific process
5 months ago by jared.andrews07 ★ 16k
4
votes
1
reply
616
views
Answer: Answer: Ambient RNA removal method that generates whole (integer) counts
5 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
522
views
Answer: Answer: RNA-seq log2 fold change to linear
5 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
405
views
Answer: Answer: What type of cancer did they study in this paper?
5 months ago by jared.andrews07 ★ 16k
1
vote
1
reply
850
views
Answer: Answer: Doheatmap in seurat
6 months ago by jared.andrews07 ★ 16k
2
votes
1
reply
465
views
Answer: Answer: DepMap Portal
6 months ago by jared.andrews07 ★ 16k
1
vote
1
reply
1.0k
views
Answer: Answer: How to remove the default title to a DimPlot() splitted into two by group.by ?
6 months ago by jared.andrews07 ★ 16k
2
votes
1
reply
646
views
Answer: Answer: macs2 output r file not generated
7 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
542
views
Answer: Answer: Visium data analysis software supporting deconvolution analysis
7 months ago by jared.andrews07 ★ 16k
3
votes
1
reply
1.5k
views
Answer: Answer: Mentor for a beginner bioinformatics student
7 months ago by jared.andrews07 ★ 16k
2
votes
1
reply
666
views
Answer: Answer: Chip-Seq and correlation of bam file
7 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
387
views
Answer: Answer: Transcription factor co-localization p-values
7 months ago by jared.andrews07 ★ 16k
6
votes
3
replies
945
views
Answer: Answer: Filter transcription factors
7 months ago by jared.andrews07 ★ 16k
0
votes
1
reply
627
views
Answer: Answer: GSEA Result Visualization in R
7 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
828
views
Answer: Answer: trajectory-like graph for a data frame
8 months ago by jared.andrews07 ★ 16k
0
votes
1
reply
777
views
Answer: Answer: Joint RNA and ATAC analysis: 10x multiomic - Fragment Path
8 months ago by jared.andrews07 ★ 16k
3
votes
1
reply
1.2k
views
Answer: Answer: How to remove the gene label in heatmap RNA-seq
8 months ago by jared.andrews07 ★ 16k
1
vote
1
reply
538
views
Answer: Answer: how to filter the scRNAseq data, by percent genes expression, counts and others
8 months ago by jared.andrews07 ★ 16k
4
votes
0
replies
1.2k
views
Answer: Answer: R based query about making pairwise matrix
8 months ago by jared.andrews07 ★ 16k
1
vote
2
replies
1.1k
views
Answer: Answer: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
8 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
2.6k
views
Answer: Answer: InferCNV results interpretation
8 months ago by jared.andrews07 ★ 16k
2
votes
2
replies
1.4k
views
Answer: Answer: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
updated 8 months ago by 43k • written 8 months ago by ★ 16k
1
vote
0
replies
406
views
Answer: Answer: DESeq2 design formula for time - condition - donor
8 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
1.5k
views
Answer: Answer: Is Bioinformatics a Professional Degree?
8 months ago by jared.andrews07 ★ 16k
0
votes
1
reply
874
views
Answer: Answer: A cluster expresses two types of cells' markers in scRNA-seq
8 months ago by jared.andrews07 ★ 16k
4
votes
2
replies
1.4k
views
Answer: Answer: Problems using ERCC spike-ins for normalization in DESeq2
8 months ago by jared.andrews07 ★ 16k
605 results • Page 1 of 13
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6