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Comment: Comment: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
8 months ago by jared.andrews07 ★ 16k
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Comment: Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
8 months ago by jared.andrews07 ★ 16k
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Comment: Comment: R based query about making pairwise matrix
8 months ago by jared.andrews07 ★ 16k
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1.2k
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Answer: Answer: R based query about making pairwise matrix
8 months ago by jared.andrews07 ★ 16k
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Answer: Answer: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
8 months ago by jared.andrews07 ★ 16k
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2.4k
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Answer: Answer: InferCNV results interpretation
8 months ago by jared.andrews07 ★ 16k
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2
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1.4k
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Answer: Answer: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
updated 8 months ago by 43k • written 8 months ago by ★ 16k
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Comment: Comment: open source projects looking for contributors
8 months ago by jared.andrews07 ★ 16k
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1.2k
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Comment: Comment: open source projects looking for contributors
8 months ago by jared.andrews07 ★ 16k
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399
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Answer: Answer: DESeq2 design formula for time - condition - donor
8 months ago by jared.andrews07 ★ 16k
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1.3k
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Comment: Comment: Differential Expression using Isoseq-supplemented reference transcriptome
8 months ago by jared.andrews07 ★ 16k
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Comment: Comment: Problems using ERCC spike-ins for normalization in DESeq2
8 months ago by jared.andrews07 ★ 16k
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1.5k
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Answer: Answer: Is Bioinformatics a Professional Degree?
8 months ago by jared.andrews07 ★ 16k
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Comment: Comment: open source projects looking for contributors
8 months ago by jared.andrews07 ★ 16k
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956
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Comment: Comment: Biostar as a next generation version
8 months ago by jared.andrews07 ★ 16k
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839
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Answer: Answer: A cluster expresses two types of cells' markers in scRNA-seq
8 months ago by jared.andrews07 ★ 16k
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2
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1.4k
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Answer: Answer: Problems using ERCC spike-ins for normalization in DESeq2
8 months ago by jared.andrews07 ★ 16k
2
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0
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744
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Comment: Comment: Load MF, CC and BP from org.Hs.eg.db
8 months ago by jared.andrews07 ★ 16k
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744
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Answer: Answer: Load MF, CC and BP from org.Hs.eg.db
updated 8 months ago by 43k • written 8 months ago by ★ 16k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
8 months ago by jared.andrews07 ★ 16k
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822
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Answer: Answer: How to loop over certain files within a directory that belongs to certain sample
8 months ago by jared.andrews07 ★ 16k
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2
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2.3k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
8 months ago by jared.andrews07 ★ 16k
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2.3k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
8 months ago by jared.andrews07 ★ 16k
3
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3
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2.3k
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Answer: Answer: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
8 months ago by jared.andrews07 ★ 16k
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455
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Answer: Answer: About batch effect in separate library preparation for multiple samples tested o
8 months ago by jared.andrews07 ★ 16k
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521
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Answer: Answer: Bioinformatics Workflow
8 months ago by jared.andrews07 ★ 16k
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843
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Comment: Comment: Error with plot functions: Graphic API version mismatch
8 months ago by jared.andrews07 ★ 16k
1
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0
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840
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Answer: Answer: Choosing a cut-off for mitochondrial genes in brain scRNAseq
8 months ago by jared.andrews07 ★ 16k
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0
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966
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Comment: Comment: CNA score calculation per cell
8 months ago by jared.andrews07 ★ 16k
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966
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Comment: Comment: CNA score calculation per cell
8 months ago by jared.andrews07 ★ 16k
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0
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704
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Answer: Answer: circular heatmap in R Shiny
updated 8 months ago by 43k • written 8 months ago by ★ 16k
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642
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Answer: Answer: Cell Barcode Identification and Counting
updated 8 months ago by 43k • written 8 months ago by ★ 16k
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966
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Answer: Answer: CNA score calculation per cell
8 months ago by jared.andrews07 ★ 16k
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912
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Comment: Comment: How to get a list of gene names from macs2 peaks
8 months ago by jared.andrews07 ★ 16k
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912
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Answer: Answer: How to get a list of gene names from macs2 peaks
8 months ago by jared.andrews07 ★ 16k
0
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0
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600
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Comment: Comment: DiffBind error: No contrasts added. There must be at least two sample groups wit
8 months ago by jared.andrews07 ★ 16k
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678
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Answer: Answer: identify cell of origin from bulk RNAseq data
8 months ago by jared.andrews07 ★ 16k
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600
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Answer: Answer: DiffBind error: No contrasts added. There must be at least two sample groups wit
8 months ago by jared.andrews07 ★ 16k
0
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1.1k
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Answer: Answer: gseGO() --> No gene can be mapped
8 months ago by jared.andrews07 ★ 16k
3
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1
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1.4k
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Answer: Answer: How to write a review article in bioinformatics
8 months ago by jared.andrews07 ★ 16k
2
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0
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492
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Answer: Answer: Neuronal markers are expressed in all cell types in 10X single-cell RNASeq
9 months ago by jared.andrews07 ★ 16k
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1
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58k
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Comment: Comment: FindConservedMarkers vs FindMarkers vs FindAllMarkers Seurat
9 months ago by jared.andrews07 ★ 16k
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0
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348
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Answer: Answer: Gene signature into scoring method
9 months ago by jared.andrews07 ★ 16k
2
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0
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664
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Comment: Comment: how to run ROSE to find super enhnacers-
9 months ago by jared.andrews07 ★ 16k
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655
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Comment: Comment: Integrate transcriptomics and CNV
9 months ago by jared.andrews07 ★ 16k
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2
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1.8k
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Answer: Answer: Typical Volcano Plot for DGE
9 months ago by jared.andrews07 ★ 16k
2
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1
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655
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Answer: Answer: Integrate transcriptomics and CNV
9 months ago by jared.andrews07 ★ 16k
1
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1
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5.0k
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Answer: Answer: Help with DiffBind Generating report-based DBA object... Error: No valid contras
9 months ago by jared.andrews07 ★ 16k
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0
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1.4k
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Comment: Comment: Heatmap for ATAC-seq
9 months ago by jared.andrews07 ★ 16k
2
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2
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1.4k
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Answer: Answer: Heatmap for ATAC-seq
9 months ago by jared.andrews07 ★ 16k
1,458 results • Page 3 of 30
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