Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
1
vote
1
reply
6.9k
views
Answer: A: IGV for RNA-SEQ
updated 4.9 years ago by 44k • written 10.5 years ago by 7.4k
0
votes
1
reply
4.1k
views
Answer: A: Picardtools Output of CollectRNAMetrices
updated 4.9 years ago by 44k • written 8.8 years ago by 7.4k
5
votes
0
replies
2.9k
views
Answer: A: Genetics and the Origin of Species
updated 4.9 years ago by 44k • written 10.5 years ago by 7.4k
0
votes
1
reply
9.8k
views
Answer: A: difference between BWA mem, sampe and bwasw
updated 4.9 years ago by 44k • written 8.8 years ago by 7.4k
0
votes
0
replies
3.2k
views
Answer: A: Bed file score , mismatch , and other column information
updated 4.9 years ago by 44k • written 10.5 years ago by 7.4k
0
votes
1
reply
4.6k
views
Answer: Answer: Retrieve the FASTA transcript sequences of a list of NCBI genes
updated 2.7 years ago by 44k • written 9.7 years ago by 7.4k
5
votes
1
reply
14k
views
Answer: A: What is the best programming language for NGS data analysis pipeline development
updated 4.9 years ago by 44k • written 10.5 years ago by 7.4k
2
votes
2
replies
5.1k
views
Answer: A: Fast search for many patterns
updated 4.9 years ago by 44k • written 10.6 years ago by 7.4k
2
votes
1
reply
3.5k
views
Answer: A: BWA index segmentation fault for specific sequence
updated 4.9 years ago by 44k • written 10.6 years ago by 7.4k
4
votes
0
replies
14k
views
Answer: A: What is the best programming language for NGS data analysis pipeline development
updated 4.9 years ago by 44k • written 10.6 years ago by 7.4k
2
votes
1
reply
4.2k
views
Answer: A: reheadering, merging and sorting on different bam file
updated 4.9 years ago by 44k • written 10.6 years ago by 7.4k
3
votes
1
reply
4.2k
views
Answer: A: Download all hg19 coding sequences from UCSC
updated 4.9 years ago by 44k • written 10.6 years ago by 7.4k
2
votes
1
reply
4.8k
views
Answer: A: Add a seq (the outgroup) to the top of its corresponding gene
updated 4.9 years ago by 44k • written 10.6 years ago by 7.4k
3
votes
0
replies
3.8k
views
Answer: A: BWA and SOAP2 cannot map a particular sequence which exists in the genome
updated 4.9 years ago by 44k • written 10.6 years ago by 7.4k
4
votes
3
replies
7.3k
views
Answer: A: Bioinformatics vs. the Climate Crisis
5.0 years ago by Dan D 7.4k
1
vote
1
reply
3.0k
views
Answer: A: CONTRA ERRORS (need urgent help!!!)
updated 5.1 years ago by 44k • written 9.4 years ago by 7.4k
1
vote
0
replies
4.1k
views
Answer: A: Splitting paired end bam files
updated 5.1 years ago by 44k • written 9.4 years ago by 7.4k
7
votes
1
reply
3.1k
views
Answer: A: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a mast
5.1 years ago by Dan D 7.4k
0
votes
3
replies
4.8k
views
Answer: Answer: Freebayes and snpeff give different number of SNPs
updated 2.7 years ago by 44k • written 10.0 years ago by 7.4k
0
votes
1
reply
5.7k
views
Answer: Answer: Counting number of bases covered across multiple bam files
updated 2.8 years ago by 44k • written 10.1 years ago by 7.4k
3
votes
0
replies
4.9k
views
Answer: A: markDuplicates: Histogram not produced
updated 5.1 years ago by 44k • written 10.2 years ago by 7.4k
6
votes
1
reply
6.0k
views
Answer: A: tophat- paired end reads combined in one file
updated 5.1 years ago by 44k • written 10.3 years ago by 7.4k
3
votes
1
reply
7.1k
views
Answer: A: FastQC and EstimateLibrarySize (Picard): Library Complexity and/or Duplicated Re
updated 5.2 years ago by 44k • written 10.5 years ago by 7.4k
2
votes
0
replies
4.4k
views
Answer: A: How can I get the informaiton about base quality(BQ) in VCF file?
updated 5.2 years ago by 44k • written 10.6 years ago by 7.4k
3
votes
1
reply
7.8k
views
Answer: A: Bwa or bowtie for mapping mulitple genomes
updated 5.2 years ago by 44k • written 10.6 years ago by 7.4k
15
votes
1
reply
28k
views
Answer: A: Human dna reference file with no prefix 'chr'
updated 5.2 years ago by 44k • written 10.1 years ago by 7.4k
1
vote
2
replies
4.1k
views
Answer: A: interval_list for hg38
5.3 years ago by Dan D 7.4k
0
votes
0
replies
2.7k
views
Answer: C: Does anyone know how the Y axis (% of reference) for the "coverage distribution"
updated 5.5 years ago by 44k • written 10.4 years ago by 7.4k
0
votes
2
replies
4.3k
views
Answer: A: How to interpret reference homozygous genotype in the VCF file generated by GATK
updated 5.5 years ago by 44k • written 10.2 years ago by 7.4k
1
vote
0
replies
5.9k
views
Answer: A: Demultiplexing bcl files into fastq files
updated 5.5 years ago by 44k • written 7.3 years ago by 7.4k
4
votes
1
reply
4.6k
views
Answer: A: Get Random Alignments From Sam File
updated 5.9 years ago by 44k • written 11.2 years ago by 7.4k
0
votes
1
reply
16k
views
Answer: A: Demultiplexing fastq files with dual barcodes
updated 6.0 years ago by 44k • written 9.6 years ago by 7.4k
2
votes
0
replies
2.8k
views
Answer: A: Notable open source bioinformatics projects written in Java?
updated 6.2 years ago by 44k • written 8.8 years ago by 7.4k
21
votes
1
reply
35k
views
Answer: A: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
updated 6.2 years ago by 44k • written 10.0 years ago by 7.4k
0
votes
1
reply
2.0k
views
Answer: A: Visualization of chromosomal locations
updated 6.2 years ago by 44k • written 8.8 years ago by 7.4k
2
votes
1
reply
1.5k
views
Answer: A: Hetero and Euchromatin
updated 6.2 years ago by 44k • written 8.8 years ago by 7.4k
2
votes
0
replies
2.5k
views
Answer: A: Rat rn5 GTF format
updated 6.2 years ago by 44k • written 8.8 years ago by 7.4k
0
votes
0
replies
10k
views
Answer: A: Project Euler Equivalent For Bioinformatics?
updated 6.2 years ago by 44k • written 10.6 years ago by 7.4k
1
vote
0
replies
4.3k
views
Answer: A: using bash variable in picard MarkDuplicates command
6.4 years ago by Dan D 7.4k
1
vote
1
reply
3.7k
views
Answer: A: Removing Indices using Cutadapt
6.6 years ago by Dan D 7.4k
1
vote
0
replies
1.9k
views
Answer: A: How does picard CollectWGSmetrics estimate coverage on Soft-Clipped Reads?
6.8 years ago by Dan D 7.4k
1
vote
0
replies
5.5k
views
Answer: C: Faster reading sequences from a fastq file
6.9 years ago by Dan D 7.4k
1
vote
0
replies
5.7k
views
Answer: A: Newbie question: how to create BWA index from multiple .fasta files
7.0 years ago by Dan D 7.4k
1
vote
1
reply
4.3k
views
Answer: A: Picard alignment statistics error
7.2 years ago by Dan D 7.4k
1
vote
0
replies
3.9k
views
Answer: A: How to upload fasta file to SSH Supercomputer
7.2 years ago by Dan D 7.4k
0
votes
1
reply
10.0k
views
Answer: A: How to split a fastq file into each corresponding sample.fastq?
7.3 years ago by Dan D 7.4k
2
votes
1
reply
2.7k
views
Answer: A: Is it possible to get VCF from two fastq files without reference genome?
7.3 years ago by Dan D 7.4k
0
votes
1
reply
5.4k
views
Answer: A: Strand colour from BED file in IGV
7.3 years ago by Dan D 7.4k
2
votes
1
reply
2.6k
views
Answer: A: Custom features in IGV
7.3 years ago by Dan D 7.4k
1
vote
1
reply
1.6k
views
Answer: A: Is there any software that can highlight or show the paired end reads within .sa
7.3 years ago by Dan D 7.4k
200 results • Page 1 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6