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Showing :
answers
2
votes
1
reply
1.0k
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Answer:
A: Tools to Study Intronic Regions from RNA-Seq Data
3.3 years ago by
GouthamAtla
12k
0
votes
0
replies
6.3k
views
Answer:
A: Sequence extraction from PFAM db with accession ID
updated 3.4 years ago by
Ram
43k • written 9.1 years ago by
GouthamAtla
12k
2
votes
1
reply
13k
views
Answer:
A: covert STOCKHOLM alignment to FASTA alignment
updated 3.4 years ago by
Ram
43k • written 9.2 years ago by
GouthamAtla
12k
4
votes
1
reply
2.0k
views
Answer:
A: Can I enrich a gene expression signature derived from single cell RNA-Seq in a b
3.8 years ago by
GouthamAtla
12k
3
votes
1
reply
1.5k
views
Answer:
A: high sequence duplication ddRAD
3.8 years ago by
GouthamAtla
12k
5
votes
0
replies
2.4k
views
Answer:
A: How to normalise RNA-Seq counts for eQTL analysis with MT-eQTL
3.8 years ago by
GouthamAtla
12k
1
vote
1
reply
946
views
Answer:
C: mRNA-based tissue typing: Which transcripts to choose for primer engineering?
3.8 years ago by
GouthamAtla
12k
2
votes
0
replies
1.6k
views
Answer:
A: WGCNA analysis for gene of interest
3.8 years ago by
GouthamAtla
12k
6
votes
1
reply
4.6k
views
Answer:
A: Counting single-cell ATAC fragments at peaks on BED file
3.8 years ago by
GouthamAtla
12k
0
votes
0
replies
1.4k
views
Answer:
A: Large differences in eQTLs between GTEx v7 and v8
3.8 years ago by
GouthamAtla
12k
3
votes
0
replies
1.4k
views
Answer:
A: Coding vs Non-coding DNA
3.8 years ago by
GouthamAtla
12k
0
votes
0
replies
824
views
Answer:
A: Checking whether the reads aligned to specific gene have the specific exon in BA
3.8 years ago by
GouthamAtla
12k
0
votes
0
replies
1.6k
views
Answer:
A: How to retrive sequnce from fasta file by using start and end point data from xl
3.8 years ago by
GouthamAtla
12k
3
votes
1
reply
1.1k
views
Answer:
A: bio python, sequence retrival
updated 3.8 years ago by
Joe
21k • written 3.8 years ago by
GouthamAtla
12k
15
votes
5
replies
16k
views
Answer:
A: What are the best tools for differential detection between ATAC-seq samples?
3.8 years ago by
GouthamAtla
12k
0
votes
0
replies
1.9k
views
Answer:
A: Removing Unknown Batch Effects and Latent Confounders in Splicing PSI Data
3.9 years ago by
GouthamAtla
12k
3
votes
0
replies
5.0k
views
Answer:
A: GNU Parallel Number of Possible Threads
4.0 years ago by
GouthamAtla
12k
1
vote
0
replies
1.1k
views
Answer:
A: gene expression correlation positive controls scRNAseq
4.0 years ago by
GouthamAtla
12k
1
vote
0
replies
1.3k
views
Answer:
A: How to best summarize read counts overlapping promoters when read counts are def
4.0 years ago by
GouthamAtla
12k
0
votes
0
replies
1.2k
views
Answer:
A: extract transcript sequence from bam file to know transcript length in control a
4.0 years ago by
GouthamAtla
12k
1
vote
1
reply
912
views
Answer:
A: Do I have adapters in my reads?
4.0 years ago by
GouthamAtla
12k
0
votes
1
reply
1.9k
views
Answer:
A: Batch effect correction in RNASeq data and plot Dendrograms cluster
4.0 years ago by
GouthamAtla
12k
2
votes
2
replies
2.8k
views
Answer:
A: from BAM to BED passing cell barcodes
4.0 years ago by
GouthamAtla
12k
0
votes
1
reply
1.5k
views
Answer:
A: average depth across samples
4.0 years ago by
GouthamAtla
12k
1
vote
1
reply
1.2k
views
Answer:
A: cell type specific enhancers
4.0 years ago by
GouthamAtla
12k
3
votes
0
replies
684
views
Answer:
A: How to distinguish the result of transcriptome sequencing and full exome sequenc
4.0 years ago by
GouthamAtla
12k
1
vote
0
replies
786
views
Answer:
A: How to estimate disease heritability from RNA-seq data?
4.0 years ago by
GouthamAtla
12k
0
votes
1
reply
667
views
Answer:
C: Introns identification in genome reference file
4.0 years ago by
GouthamAtla
12k
1
vote
1
reply
2.5k
views
Answer:
A: Editing BAM file using pysam
4.0 years ago by
GouthamAtla
12k
1
vote
0
replies
3.6k
views
Answer:
A: How to split a heatmap at specific row?
4.0 years ago by
GouthamAtla
12k
2
votes
0
replies
1.2k
views
Answer:
A: Count exon-exon junction reads for transcripts
4.0 years ago by
GouthamAtla
12k
2
votes
2
replies
1.0k
views
Answer:
A: tools for 10X scRNA-seq counts
4.0 years ago by
GouthamAtla
12k
0
votes
0
replies
2.0k
views
Answer:
A: Uploading GSEA results to Run Cytoscape
4.0 years ago by
GouthamAtla
12k
1
vote
0
replies
1.5k
views
Answer:
A: Retrieving individual cells from scRNA-seq bigWig files?
4.0 years ago by
GouthamAtla
12k
0
votes
0
replies
938
views
Answer:
A: Extract longest mRNA from .GFF when I have multiple rows of same seqID
4.0 years ago by
GouthamAtla
12k
1
vote
0
replies
892
views
Answer:
A: Coverage of target genes
4.0 years ago by
GouthamAtla
12k
1
vote
1
reply
1.3k
views
Answer:
A: how to label one gene only inside my volcano plot? or to show the gene names but
4.0 years ago by
GouthamAtla
12k
0
votes
0
replies
817
views
Answer:
A: Differential gene expression
4.0 years ago by
GouthamAtla
12k
0
votes
1
reply
6.3k
views
Answer:
A: Annotation of Single Cell Clusters
4.0 years ago by
GouthamAtla
12k
2
votes
0
replies
1.3k
views
Answer:
A: RNA-Seq analysis of data from different platforms
4.0 years ago by
GouthamAtla
12k
0
votes
0
replies
1.3k
views
Answer:
A: How to use Hi-C data?
4.0 years ago by
GouthamAtla
12k
2
votes
0
replies
1.9k
views
Answer:
A: Can I use the SCENIC package to analyze the transcription factors in the bulk RN
4.0 years ago by
GouthamAtla
12k
1
vote
1
reply
2.7k
views
Answer:
A: Weird MA-plot (DESeq2)
4.0 years ago by
GouthamAtla
12k
1
vote
0
replies
1.1k
views
Answer:
A: Annotating narrow.peak to promoter region using GenomicFeatures
4.0 years ago by
GouthamAtla
12k
1
vote
2
replies
3.7k
views
Answer:
A: Cutadapt for loop issue
4.0 years ago by
GouthamAtla
12k
2
votes
1
reply
3.3k
views
Answer:
A: Differential binding analysis of motif-containing peaks
updated 4.3 years ago by
Ram
43k • written 8.2 years ago by
GouthamAtla
12k
0
votes
1
reply
2.7k
views
Answer:
A: bedtools intersect: keep pairing consistent
updated 4.3 years ago by
Ram
43k • written 8.2 years ago by
GouthamAtla
12k
0
votes
2
replies
4.4k
views
Answer:
A: Extract Sequences From [Gtf File] + [Genome Fasta File], combine matching XLOCs
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
GouthamAtla
12k
2
votes
1
reply
4.5k
views
Answer:
Answer: How to find sequence patterns in genome?
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
GouthamAtla
12k
3
votes
1
reply
5.5k
views
Answer:
Answer: HOWTO extract regions from GRanges object
updated 21 months ago by
Ram
43k • written 8.3 years ago by
GouthamAtla
12k
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