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1.0k
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Answer: A: Tools to Study Intronic Regions from RNA-Seq Data
3.3 years ago by GouthamAtla 12k
0
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0
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6.3k
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Answer: A: Sequence extraction from PFAM db with accession ID
updated 3.4 years ago by 43k • written 9.2 years ago by 12k
2
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1
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13k
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Answer: A: covert STOCKHOLM alignment to FASTA alignment
updated 3.4 years ago by 43k • written 9.2 years ago by 12k
4
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1
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2.0k
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Answer: A: Can I enrich a gene expression signature derived from single cell RNA-Seq in a b
3.8 years ago by GouthamAtla 12k
3
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1
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1.6k
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Answer: A: high sequence duplication ddRAD
3.8 years ago by GouthamAtla 12k
5
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0
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2.4k
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Answer: A: How to normalise RNA-Seq counts for eQTL analysis with MT-eQTL
3.8 years ago by GouthamAtla 12k
1
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1
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958
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Answer: C: mRNA-based tissue typing: Which transcripts to choose for primer engineering?
3.8 years ago by GouthamAtla 12k
2
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0
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1.6k
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Answer: A: WGCNA analysis for gene of interest
3.9 years ago by GouthamAtla 12k
6
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1
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4.7k
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Answer: A: Counting single-cell ATAC fragments at peaks on BED file
3.9 years ago by GouthamAtla 12k
0
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0
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1.4k
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Answer: A: Large differences in eQTLs between GTEx v7 and v8
3.9 years ago by GouthamAtla 12k
3
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0
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1.4k
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Answer: A: Coding vs Non-coding DNA
3.9 years ago by GouthamAtla 12k
0
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0
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841
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Answer: A: Checking whether the reads aligned to specific gene have the specific exon in BA
3.9 years ago by GouthamAtla 12k
0
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0
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1.7k
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Answer: A: How to retrive sequnce from fasta file by using start and end point data from xl
3.9 years ago by GouthamAtla 12k
3
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1
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1.1k
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Answer: A: bio python, sequence retrival
updated 3.9 years ago by 21k • written 3.9 years ago by 12k
15
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5
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16k
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Answer: A: What are the best tools for differential detection between ATAC-seq samples?
3.9 years ago by GouthamAtla 12k
0
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0
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1.9k
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Answer: A: Removing Unknown Batch Effects and Latent Confounders in Splicing PSI Data
4.0 years ago by GouthamAtla 12k
3
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0
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5.1k
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Answer: A: GNU Parallel Number of Possible Threads
4.0 years ago by GouthamAtla 12k
1
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0
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1.1k
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Answer: A: gene expression correlation positive controls scRNAseq
4.0 years ago by GouthamAtla 12k
1
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0
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1.3k
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Answer: A: How to best summarize read counts overlapping promoters when read counts are def
4.0 years ago by GouthamAtla 12k
0
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0
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1.2k
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Answer: A: extract transcript sequence from bam file to know transcript length in control a
4.0 years ago by GouthamAtla 12k
1
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1
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935
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Answer: A: Do I have adapters in my reads?
4.0 years ago by GouthamAtla 12k
0
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1
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1.9k
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Answer: A: Batch effect correction in RNASeq data and plot Dendrograms cluster
4.1 years ago by GouthamAtla 12k
2
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2
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2.9k
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Answer: A: from BAM to BED passing cell barcodes
4.1 years ago by GouthamAtla 12k
0
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1
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1.5k
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Answer: A: average depth across samples
4.1 years ago by GouthamAtla 12k
1
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1
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1.2k
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Answer: A: cell type specific enhancers
4.1 years ago by GouthamAtla 12k
3
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0
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697
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Answer: A: How to distinguish the result of transcriptome sequencing and full exome sequenc
4.1 years ago by GouthamAtla 12k
1
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0
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799
views
Answer: A: How to estimate disease heritability from RNA-seq data?
4.1 years ago by GouthamAtla 12k
0
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1
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678
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Answer: C: Introns identification in genome reference file
4.1 years ago by GouthamAtla 12k
1
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1
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2.6k
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Answer: A: Editing BAM file using pysam
4.1 years ago by GouthamAtla 12k
1
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0
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3.6k
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Answer: A: How to split a heatmap at specific row?
4.1 years ago by GouthamAtla 12k
2
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0
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1.3k
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Answer: A: Count exon-exon junction reads for transcripts
4.1 years ago by GouthamAtla 12k
2
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2
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1.1k
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Answer: A: tools for 10X scRNA-seq counts
4.1 years ago by GouthamAtla 12k
0
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0
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2.0k
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Answer: A: Uploading GSEA results to Run Cytoscape
4.1 years ago by GouthamAtla 12k
1
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0
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1.5k
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Answer: A: Retrieving individual cells from scRNA-seq bigWig files?
4.1 years ago by GouthamAtla 12k
0
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0
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953
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Answer: A: Extract longest mRNA from .GFF when I have multiple rows of same seqID
4.1 years ago by GouthamAtla 12k
1
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0
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902
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Answer: A: Coverage of target genes
4.1 years ago by GouthamAtla 12k
1
vote
1
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1.4k
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Answer: A: how to label one gene only inside my volcano plot? or to show the gene names but
4.1 years ago by GouthamAtla 12k
0
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0
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838
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Answer: A: Differential gene expression
4.1 years ago by GouthamAtla 12k
0
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1
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6.4k
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Answer: A: Annotation of Single Cell Clusters
4.1 years ago by GouthamAtla 12k
2
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0
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1.4k
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Answer: A: RNA-Seq analysis of data from different platforms
4.1 years ago by GouthamAtla 12k
0
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0
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1.3k
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Answer: A: How to use Hi-C data?
4.1 years ago by GouthamAtla 12k
2
votes
0
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1.9k
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Answer: A: Can I use the SCENIC package to analyze the transcription factors in the bulk RN
4.1 years ago by GouthamAtla 12k
1
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1
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2.7k
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Answer: A: Weird MA-plot (DESeq2)
4.1 years ago by GouthamAtla 12k
1
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0
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1.1k
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Answer: A: Annotating narrow.peak to promoter region using GenomicFeatures
4.1 years ago by GouthamAtla 12k
1
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2
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3.7k
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Answer: A: Cutadapt for loop issue
4.1 years ago by GouthamAtla 12k
2
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1
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3.3k
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Answer: A: Differential binding analysis of motif-containing peaks
updated 4.3 years ago by 43k • written 8.3 years ago by 12k
0
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1
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2.8k
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Answer: A: bedtools intersect: keep pairing consistent
updated 4.3 years ago by 43k • written 8.3 years ago by 12k
0
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2
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4.5k
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Answer: A: Extract Sequences From [Gtf File] + [Genome Fasta File], combine matching XLOCs
updated 4.4 years ago by 43k • written 8.3 years ago by 12k
2
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1
reply
4.5k
views
Answer: Answer: How to find sequence patterns in genome?
updated 4.4 years ago by 43k • written 8.3 years ago by 12k
3
votes
1
reply
5.6k
views
Answer: Answer: HOWTO extract regions from GRanges object
updated 21 months ago by 43k • written 8.3 years ago by 12k
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