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12k
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Answer: A: understanding pysam pileup()
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
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1
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1.5k
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Comment: C: difference between tophat2 and bowtie2 alingner
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
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1
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3.3k
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Answer: A: extract sequences from a fasta file and save into different files
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
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1
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2.7k
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Answer: A: Cuffdiff merged.gtf to UCSC bed format with gene_id
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
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2.7k
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Comment: C: Cuffdiff merged.gtf to UCSC bed format with gene_id
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
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1.4k
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Comment: C: illumina hiseq data, enviromental sample, how to look for some functional genes,
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
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1.9k
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Comment: C: Beginner with problem and no idea where to start
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
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3.8k
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Comment: C: How to find SNPs in Promoter or Enhancer region?
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
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2.9k
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Answer: A: bash loop to count variants using vcftools
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
3
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1
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3.1k
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Answer: A: Getting read counts per loci
updated 4.5 years ago by 43k • written 8.5 years ago by 12k
3
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0
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6.3k
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Answer: A: How to find overlapping regions among three bed files [Solved]
updated 4.5 years ago by 43k • written 8.5 years ago by 12k
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1
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4.6k
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Comment: C: macs2 "Effective genome size" for repetitive genomes
updated 4.5 years ago by 43k • written 8.5 years ago by 12k
2
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1
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2.1k
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Answer: A: All the CIGAR strings of reads mapped by Bowtie are "I"
updated 4.5 years ago by 43k • written 8.5 years ago by 12k
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0
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4.2k
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Answer: A: Get multiple snps coverage (allelic depth) from bam files
updated 4.5 years ago by 43k • written 8.5 years ago by 12k
1
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1
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3.8k
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Comment: C: abyss-pe and abyss-map
updated 4.5 years ago by 43k • written 8.5 years ago by 12k
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2
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21k
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Answer: A: how to rearrange fasta file according to its length
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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1
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21k
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Comment: C: how to rearrange fasta file according to its length
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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1
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4.3k
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Answer: A: RNA-seq normalization and differential expression
updated 4.5 years ago by 43k • written 8.6 years ago by 12k
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0
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14k
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Comment: C: Counting number of genes using htseq-count tool.
updated 4.5 years ago by 43k • written 8.6 years ago by 12k
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2.5k
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Comment: C: problem in converting bcf file to bam file in bcfToBam
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
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0
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2.5k
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Comment: C: problem in converting bcf file to bam file in bcfToBam
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
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1
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2.3k
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Comment: C: Nothing will align with HTSeq?
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
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1
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2.3k
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Comment: C: Nothing will align with HTSeq?
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
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1
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2.8k
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Comment: C: Using cufflinks : warning cannot find genomic sequence
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
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0
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2.1k
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Comment: C: why i can't find my pachage?
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
1
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1
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2.4k
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Answer: Answer: Generate heatmap or table showing genes found in multiple tests
updated 20 months ago by 43k • written 8.7 years ago by 12k
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0
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5.6k
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Comment: C: split VCF to individual scaffolds
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
2
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1
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13k
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Answer: A: Problem with MACS2 Install?
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
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1
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1.8k
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Answer: A: Issues producing an output file when using fastx quality stats program
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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1
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5.1k
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Comment: C: Error installing miso
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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1
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2.8k
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Answer: A: HTseq problem....... with code for qa module published in the HTseq web tutoria
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
1
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1
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3.8k
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Comment: C: bowtie2 tophat2 vesion
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
1
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0
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1.6k
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Answer: A: small sequence ectraction
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
24
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11
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34k
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Understanding Samtools Flagstat Output
samtools picard markduplicates illumina paired-end
updated 4.5 years ago by ▴ 20 • written 10.6 years ago by 12k
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1
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2.4k
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Comment: Comment: how to remove multiple redundent sequence id of protein
updated 19 months ago by 43k • written 8.8 years ago by 12k
2
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1
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3.5k
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Answer: A: cutadapt cannot work on my fastq files
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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2
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7.9k
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Answer: A: Why is an Input file used as a control during MACS peak calling?
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
3
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1
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13k
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Comment: C: Convert multiple-sequence fasta file to single long sequence
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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0
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2.6k
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Comment: C: trying to select some files from a multifasta depending on accession number usin
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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2
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2.6k
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Answer: A: trying to select some files from a multifasta depending on accession number usin
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
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1
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2.6k
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Answer: Answer: juncBASE python script
updated 19 months ago by 43k • written 8.8 years ago by 12k
0
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1
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2.6k
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Comment: Comment: juncBASE python script
updated 19 months ago by 43k • written 8.8 years ago by 12k
0
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1
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2.6k
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Comment: C: juncBASE python script
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
1
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1
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5.0k
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Comment: C: HTSeq analysis for Illumina tissue samples?
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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0
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1.1k
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Comment: C: SC-RNA Seq Analysis tutorials
4.5 years ago by GouthamAtla 12k
0
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1
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790
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Comment: C: How to calculate N in TWAS simulated data
4.6 years ago by GouthamAtla 12k
3
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1
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661
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Answer: C: Correlation analysis for low expressed genes
4.6 years ago by GouthamAtla 12k
0
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1
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790
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Comment: C: How to calculate N in TWAS simulated data
4.6 years ago by GouthamAtla 12k
0
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0
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865
views
Answer: A: Most recent tools for circadian gene expression analysis (in plants)
4.6 years ago by GouthamAtla 12k
3
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1
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3.3k
views
Answer: A: DiffBind to call differential binding of Super-enhancers from ROSE
4.6 years ago by GouthamAtla 12k
1,490 results • Page 4 of 30
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