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Comment: C: Sample names for TCGA data from GDC-legacy archive
7.1 years ago by Kevin Blighe ★ 90k
2
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1
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21k
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Comment: C: Sample names for TCGA data from GDC-legacy archive
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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1.3k
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Answer: A: Query regarding TCGA samples
7.1 years ago by Kevin Blighe ★ 90k
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2.1k
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Comment: A: Target genes of position-specific transcription factors
7.1 years ago by Kevin Blighe ★ 90k
2
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1
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1.3k
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Answer: C: Download of FF-FFPE pair DNA seq data
7.1 years ago by Kevin Blighe ★ 90k
1
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1
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2.3k
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Comment: C: Simple integrative DNA methylation and mRNA expression analysis
7.1 years ago by Kevin Blighe ★ 90k
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0
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2.6k
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Comment: C: How to extract the mobile genetic elements
7.1 years ago by Kevin Blighe ★ 90k
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0
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2.6k
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Comment: C: How do I replace the values in one file with the values in another file?
7.1 years ago by Kevin Blighe ★ 90k
0
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1
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2.6k
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Comment: C: How do I replace the values in one file with the values in another file?
7.1 years ago by Kevin Blighe ★ 90k
1
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0
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1.3k
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Answer: A: Question: Reading methylationand gene expression with only IDAT files downloaded
7.1 years ago by Kevin Blighe ★ 90k
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1
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5.1k
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Comment: C: How to construct Co-expression network between Coding and lncRNAs?
7.1 years ago by Kevin Blighe ★ 90k
3
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1
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2.3k
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Answer: A: Simple integrative DNA methylation and mRNA expression analysis
7.1 years ago by Kevin Blighe ★ 90k
0
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1
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5.1k
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Comment: C: How to construct Co-expression network between Coding and lncRNAs?
7.1 years ago by Kevin Blighe ★ 90k
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0
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7.0k
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Comment: C: how to correct gene expression based on tumor purity
7.1 years ago by Kevin Blighe ★ 90k
1
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1
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5.1k
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Comment: C: How to construct Co-expression network between Coding and lncRNAs?
7.1 years ago by Kevin Blighe ★ 90k
1
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1
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5.8k
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Comment: C: FarmCPU - how to explain the reported 'effect'?
7.1 years ago by Kevin Blighe ★ 90k
1
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0
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2.6k
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Comment: C: GDC TCGA: cannot find CNV files by their UUIDs
7.1 years ago by Kevin Blighe ★ 90k
6
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2
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16k
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Answer: Answer: How to use GSVA for the RNA-seq RPKM file
4.3 years ago by Kevin Blighe ★ 90k
0
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0
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1.4k
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Comment: C: Annotation format for SNVs
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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68k
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
7.1 years ago by Kevin Blighe ★ 90k
1
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0
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60k
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Comment: C: Network plot from expression data in R using igraph
7.1 years ago by Kevin Blighe ★ 90k
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0
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7.1k
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Comment: C: Which normalization method to use FPKM/TPM?
7.1 years ago by Kevin Blighe ★ 90k
0
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1
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2.0k
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Comment: C: Identifying novel isoforms from RNAseq data
7.1 years ago by Kevin Blighe ★ 90k
1
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1
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16k
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Comment: C: Heatmap : why scaling ?
7.1 years ago by Kevin Blighe ★ 90k
7
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3
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16k
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Answer: C: Heatmap : why scaling ?
7.1 years ago by Kevin Blighe ★ 90k
0
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1
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7.1k
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Comment: C: Which normalization method to use FPKM/TPM?
7.1 years ago by Kevin Blighe ★ 90k
1
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1
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7.1k
views
Answer: A: Which normalization method to use FPKM/TPM?
7.1 years ago by Kevin Blighe ★ 90k
1
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0
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16k
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Comment: C: How to use GSVA for the RNA-seq RPKM file
7.1 years ago by Kevin Blighe ★ 90k
1
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1
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3.7k
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Comment: C: How to find CNV or CN state information from rawcopy output ?
7.1 years ago by Kevin Blighe ★ 90k
0
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1
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68k
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
7.1 years ago by Kevin Blighe ★ 90k
3
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1
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2.6k
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Answer: A: Short-long read hybrid de novo assembly - determine k-mer size
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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2.4k
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Comment: C: Are there any way to find DMR with the data in TCGA methylation level3?
7.1 years ago by Kevin Blighe ★ 90k
0
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1
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2.4k
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Answer: A: Are there any way to find DMR with the data in TCGA methylation level3?
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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1.9k
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Comment: C: differential gene expression analysis
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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5.9k
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Comment: C: R code for Differential Gene Expression
7.1 years ago by Kevin Blighe ★ 90k
1
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0
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2.7k
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Answer: C: How to map Affymetrix probe ID's from a GEO dataset to corresponding gene symbol
7.1 years ago by Kevin Blighe ★ 90k
1
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1
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2.6k
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Comment: C: GDC TCGA: cannot find CNV files by their UUIDs
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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21k
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Comment: C: Sample names for TCGA data from GDC-legacy archive
7.1 years ago by Kevin Blighe ★ 90k
0
votes
1
reply
21k
views
Comment: C: Sample names for TCGA data from GDC-legacy archive
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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10k
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Comment: C: Meaning of TCGA CNV data
7.1 years ago by Kevin Blighe ★ 90k
0
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1
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2.9k
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Comment: C: Change python version to run cutadapt
7.1 years ago by Kevin Blighe ★ 90k
1
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0
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1.4k
views
Comment: C: DEGs analysis of RNA-seq multiple conditions
7.1 years ago by Kevin Blighe ★ 90k
1
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0
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1.8k
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Answer: A: GDC legacy archive: get sample sheet containing sample_group and sample_ source
7.1 years ago by Kevin Blighe ★ 90k
1
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0
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2.6k
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Comment: C: question about survival analysis
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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3.7k
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Comment: C: Visualize Mutation Frequency
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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2.6k
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Comment: C: question about survival analysis
7.1 years ago by Kevin Blighe ★ 90k
0
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0
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17k
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Comment: C: Twobittofa download and install link?
7.1 years ago by Kevin Blighe ★ 90k
14
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4
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71k
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Answer: A: Volcano Plot from DEseq2
7.1 years ago by Kevin Blighe ★ 90k
0
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2
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5.9k
views
Comment: C: R code for Differential Gene Expression
7.1 years ago by Kevin Blighe ★ 90k
1
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1
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13k
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Comment: C: cannot replicate the pheatmap scale function
7.1 years ago by Kevin Blighe ★ 90k
10,067 results • Page 122 of 202
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