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Answer: A: Storing a matrix.mtx in a gene expression matrix csv/ txt format
5.5 years ago by Kevin Blighe 90k
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1
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5.3k
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Comment: C: Error in `[.data.frame`(res.df, , cols) : undefined columns selected when export
5.5 years ago by Kevin Blighe 90k
4
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3.4k
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Answer: A: Collapsing biological replicates for co-expression analysis using WGCNA
5.5 years ago by Kevin Blighe 90k
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1
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5.8k
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Comment: C: DEseq2 design matrix with 3 factors
5.5 years ago by Kevin Blighe 90k
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24k
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Comment: C: Best tool for variant calling
5.5 years ago by Kevin Blighe 90k
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1
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5.8k
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Comment: C: DEseq2 design matrix with 3 factors
5.5 years ago by Kevin Blighe 90k
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1.4k
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Comment: C: Variant data from covid-19 patients
5.5 years ago by Kevin Blighe 90k
15
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2
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34k
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Answer: A: DeSeq2 error: Every gene contains at least one zero, cannot compute log geometri
5.5 years ago by Kevin Blighe 90k
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1
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2.8k
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Comment: C: How to simultaneously convert gene IDs to Kegg IDs for E. coli
5.5 years ago by Kevin Blighe 90k
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2.8k
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Comment: C: How to simultaneously convert gene IDs to Kegg IDs for E. coli
5.5 years ago by Kevin Blighe 90k
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10k
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Comment: C: How to perform PCA on gene expression?
5.5 years ago by Kevin Blighe 90k
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7.0k
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Answer: A: retrieve TPM matrix from raw counts matrix or DESeq2 object dds
5.5 years ago by Kevin Blighe 90k
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2.7k
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Comment: C: DEXSeq aggregates two different genes together
5.5 years ago by Kevin Blighe 90k
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4.7k
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Comment: C: error in TXIMPORT command for RSEM
5.5 years ago by Kevin Blighe 90k
0
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1
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2.8k
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Answer: A: How to simultaneously convert gene IDs to Kegg IDs for E. coli
5.5 years ago by Kevin Blighe 90k
0
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3
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4.7k
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Comment: C: error in TXIMPORT command for RSEM
5.5 years ago by Kevin Blighe 90k
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1
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4.7k
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Comment: C: error in TXIMPORT command for RSEM
5.5 years ago by Kevin Blighe 90k
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1.3k
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Answer: A: Querying GEO and TCGA
5.5 years ago by Kevin Blighe 90k
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4.7k
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Comment: C: error in TXIMPORT command for RSEM
5.5 years ago by Kevin Blighe 90k
2
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1.1k
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Comment: C: GWAS vs other bioinformatics methods
5.5 years ago by Kevin Blighe 90k
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1
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1.3k
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Comment: C: clinical trait file
5.5 years ago by Kevin Blighe 90k
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3.6k
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Comment: C: Usage of selectLab in PCAtools, R
5.5 years ago by Kevin Blighe 90k
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1
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1.8k
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Comment: C: Adding Gene Name attribute to CDS feature ??
5.5 years ago by Kevin Blighe 90k
1
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1
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3.6k
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Comment: C: Usage of selectLab in PCAtools, R
5.5 years ago by Kevin Blighe 90k
0
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0
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3.6k
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Comment: C: Usage of selectLab in PCAtools, R
5.5 years ago by Kevin Blighe 90k
0
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1
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1.8k
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Comment: C: Adding Gene Name attribute to CDS feature ??
5.5 years ago by Kevin Blighe 90k
0
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1
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24k
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Comment: C: WGCNA modules and categorical traits relationship
5.5 years ago by Kevin Blighe 90k
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1
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1.8k
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Comment: C: Adding Gene Name attribute to CDS feature ??
5.5 years ago by Kevin Blighe 90k
0
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1
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1.8k
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Comment: C: Adding Gene Name attribute to CDS feature ??
5.5 years ago by Kevin Blighe 90k
2
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2
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2.7k
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Answer: A: What codes do I use to generate gene cluster vectors with entrez gene id on clus
5.5 years ago by Kevin Blighe 90k
0
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2.7k
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Comment: C: What codes do I use to generate gene cluster vectors with entrez gene id on clus
5.5 years ago by Kevin Blighe 90k
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975
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Answer: A: Questions regarding whole exome sequencing
5.5 years ago by Kevin Blighe 90k
0
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1.8k
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Comment: C: How to adjust FDR in plotMD?
5.5 years ago by Kevin Blighe 90k
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1
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1.8k
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Comment: C: How to adjust FDR in plotMD?
5.5 years ago by Kevin Blighe 90k
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2.4k
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Comment: C: Using awk to filter .gtf by FPKM
5.5 years ago by Kevin Blighe 90k
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4.4k
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Comment: C: Only females but still few reads map to Y chromosome
5.5 years ago by Kevin Blighe 90k
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2.3k
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Comment: C: Interpretation of "standardized expression matrix"?
5.5 years ago by Kevin Blighe 90k
0
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2
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2.4k
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Comment: C: Using awk to filter .gtf by FPKM
5.5 years ago by Kevin Blighe 90k
0
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1
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2.3k
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Comment: C: Interpretation of "standardized expression matrix"?
5.5 years ago by Kevin Blighe 90k
2
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0
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2.7k
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Comment: A: DEXSeq aggregates two different genes together
5.5 years ago by Kevin Blighe 90k
0
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0
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19k
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Comment: C: Scale and Center [normalized] RNA-seq expression counts for PCA ?
5.5 years ago by Kevin Blighe 90k
0
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1
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7.5k
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Comment: C: Filtering in RNA-Seq to get Differentially Expressed lncRNA
5.5 years ago by Kevin Blighe 90k
0
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1
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19k
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Comment: C: Scale and Center [normalized] RNA-seq expression counts for PCA ?
5.5 years ago by Kevin Blighe 90k
3
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1
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4.2k
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Answer: A: How can I reassign assayData slot of ExpressionSet?
5.5 years ago by Kevin Blighe 90k
0
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1
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19k
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Comment: C: Scale and Center [normalized] RNA-seq expression counts for PCA ?
5.5 years ago by Kevin Blighe 90k
0
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1
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19k
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Comment: C: Scale and Center [normalized] RNA-seq expression counts for PCA ?
5.5 years ago by Kevin Blighe 90k
0
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1
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7.5k
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Comment: C: Filtering in RNA-Seq to get Differentially Expressed lncRNA
5.5 years ago by Kevin Blighe 90k
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1
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7.5k
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Comment: C: Filtering in RNA-Seq to get Differentially Expressed lncRNA
5.5 years ago by Kevin Blighe 90k
2
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2
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7.5k
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Answer: A: Filtering in RNA-Seq to get Differentially Expressed lncRNA
5.5 years ago by Kevin Blighe 90k
0
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0
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2.9k
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Answer: A: How to generate a dataframe of deseq2 result excluding 'low counts' and 'outlier
5.5 years ago by Kevin Blighe 90k
10,001 results • Page 47 of 201
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