Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
3.1k
views
Comment: C: Too low FPKM values from StringTie
5.3 years ago by shawn.w.foley ★ 1.3k
1
vote
1
reply
3.1k
views
Comment: C: Too low FPKM values from StringTie
5.3 years ago by shawn.w.foley ★ 1.3k
1
vote
1
reply
3.1k
views
Answer: C: Too low FPKM values from StringTie
5.3 years ago by shawn.w.foley ★ 1.3k
0
votes
0
replies
1.3k
views
Comment: C: Unequally pooling libraries for RNAseq?
5.4 years ago by shawn.w.foley ★ 1.3k
0
votes
1
reply
1.3k
views
Answer: A: Unequally pooling libraries for RNAseq?
5.4 years ago by shawn.w.foley ★ 1.3k
0
votes
2
replies
3.9k
views
Answer: A: Get -400bp to +50bp sequence of gene from gff3 file
5.4 years ago by shawn.w.foley ★ 1.3k
0
votes
1
reply
1.4k
views
Comment: C: How to identify translocation events within cell lines
5.4 years ago by shawn.w.foley ★ 1.3k
0
votes
1
reply
1.4k
views
Comment: C: How to identify translocation events within cell lines
5.4 years ago by shawn.w.foley ★ 1.3k
2
votes
7
replies
1.4k
views
How to identify translocation events within cell lines
translocation whole genome seq panel
updated 5.4 years ago by ★ 2.5k • written 5.4 years ago by ★ 1.3k
0
votes
0
replies
1.4k
views
Comment: C: How to identify translocation events within cell lines
5.4 years ago by shawn.w.foley ★ 1.3k
0
votes
1
reply
7.2k
views
Comment: C: After sorting bam file not able to index ?
5.4 years ago by shawn.w.foley ★ 1.3k
0
votes
0
replies
1.2k
views
Answer: A: Finding deferentially active regions with DESeq2
5.5 years ago by shawn.w.foley ★ 1.3k
0
votes
0
replies
1.5k
views
Comment: C: Filtering fastq vs BAM for fragment size range
5.5 years ago by shawn.w.foley ★ 1.3k
1
vote
0
replies
2.0k
views
Answer: A: Venn diagram generation criteria from RNAseq data
5.5 years ago by shawn.w.foley ★ 1.3k
0
votes
1
reply
1.5k
views
Comment: C: miRNA mRNA interaction studies
5.5 years ago by shawn.w.foley ★ 1.3k
0
votes
1
reply
1.3k
views
Comment: C: General Question to shRNA-Seq analysis
5.6 years ago by shawn.w.foley ★ 1.3k
0
votes
2
replies
1.4k
views
Comment: C: Extract rows from file two having the 4th column ( which contain /1 /2 signs ) i
5.6 years ago by shawn.w.foley ★ 1.3k
2
votes
1
reply
1.4k
views
Answer: A: Extract rows from file two having the 4th column ( which contain /1 /2 signs ) i
5.6 years ago by shawn.w.foley ★ 1.3k
0
votes
1
reply
1.4k
views
Comment: C: Extract rows from file two having the 4th column ( which contain /1 /2 signs ) i
5.6 years ago by shawn.w.foley ★ 1.3k
2
votes
2
replies
11k
views
Answer: A: GSEA, input metrics
5.8 years ago by shawn.w.foley ★ 1.3k
4
votes
3
replies
8.0k
views
How do you compare GSEA results between treatments?
GSEA microarray
updated 6.3 years ago by • 0 • written 6.6 years ago by ★ 1.3k
0
votes
1
reply
11k
views
Comment: C: Analyzing RNA-seq without replicates
6.3 years ago by shawn.w.foley ★ 1.3k
13
votes
6
replies
11k
views
Analyzing RNA-seq without replicates
RNA-seq cufflinks DESeq2 isoem2 isode2
updated 6.3 years ago by 19k • written 6.3 years ago by ★ 1.3k
1
vote
1
reply
1.6k
views
Comment: C: How to find the gene structure of a gene?
6.4 years ago by shawn.w.foley ★ 1.3k
1
vote
1
reply
28k
views
Comment: C: R DESeq: What exactly is Variance Stabilizating Transformation?
6.4 years ago by shawn.w.foley ★ 1.3k
1
vote
0
replies
2.4k
views
Answer: A: How do strand specific sequencing protocols work?
6.4 years ago by shawn.w.foley ★ 1.3k
4
votes
1
reply
5.3k
views
Answer: A: Replicates for RNA-seq from 1 cell lines undergoing different treatments
6.4 years ago by shawn.w.foley ★ 1.3k
1
vote
0
replies
1.9k
views
Answer: A: How do I extract normalized signal values for Affy SNP 6.0 chip using oligo or c
6.5 years ago by shawn.w.foley ★ 1.3k
1
vote
1
reply
1.9k
views
How do I extract normalized signal values for Affy SNP 6.0 chip using oligo or crlmm?
SNP bioconductor oligos crlmm
6.5 years ago by shawn.w.foley ★ 1.3k
0
votes
0
replies
1.5k
views
Comment: C: When performing Fisher's exact test, should I consider all annotated or all dete
6.5 years ago by shawn.w.foley ★ 1.3k
3
votes
2
replies
1.5k
views
When performing Fisher's exact test, should I consider all annotated or all detected transcripts?
RNA-Seq fisher's test expression statistics
updated 6.5 years ago by ▴ 990 • written 6.5 years ago by ★ 1.3k
131 results • Page 3 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6