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187
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Answer:
Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
2 hours ago by
swbarnes2
14k
0
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0
replies
545
views
Answer:
Answer: Removing adapter/primer sequence from reads while keeping flanking regions
15 days ago by
swbarnes2
14k
0
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1
reply
545
views
Comment:
Comment: Removing adapter/primer sequence from reads while keeping flanking regions
15 days ago by
swbarnes2
14k
0
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0
replies
378
views
Comment:
Comment: Seeking Help with Unexpected MA Plot Output
16 days ago by
swbarnes2
14k
1
vote
0
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397
views
Comment:
Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
19 days ago by
swbarnes2
14k
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0
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311
views
Answer:
Answer: Find out shared differentially expressed genes between two cell lines due to kno
27 days ago by
swbarnes2
14k
0
votes
0
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280
views
Answer:
Answer: Detecting viruses in human rna seq data
29 days ago by
swbarnes2
14k
1
vote
1
reply
380
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Answer:
Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
29 days ago by
swbarnes2
14k
2
votes
0
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511
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Answer:
Answer: Overriding a color palette in R to emphasize specific data points
4 weeks ago by
swbarnes2
14k
0
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0
replies
543
views
Comment:
Comment: RNA_seq
4 weeks ago by
swbarnes2
14k
0
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1
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543
views
Answer:
Answer: RNA_seq
5 weeks ago by
swbarnes2
14k
1
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0
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349
views
Answer:
Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
5 weeks ago by
swbarnes2
14k
2
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0
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362
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Answer:
Answer: Re. Batch effect correction in data with a design matrix without full rank
5 weeks ago by
swbarnes2
14k
0
votes
1
reply
508
views
Answer:
Answer: RNA Seq Sample Outlier
5 weeks ago by
swbarnes2
14k
1
vote
1
reply
371
views
Answer:
Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
5 weeks ago by
swbarnes2
14k
1
vote
1
reply
404
views
Answer:
Answer: (STAR) What causes a high number of reads that are unmapped because they are too
6 weeks ago by
swbarnes2
14k
2
votes
1
reply
287
views
Answer:
Answer: Single cell rna sequencing analysis using R help
6 weeks ago by
swbarnes2
14k
3
votes
0
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394
views
Answer:
Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
6 weeks ago by
swbarnes2
14k
1
vote
0
replies
236
views
Answer:
Answer: biological replicate in STAR command
7 weeks ago by
swbarnes2
14k
1
vote
0
replies
348
views
Answer:
Answer: PCA plot analysis
7 weeks ago by
swbarnes2
14k
0
votes
1
reply
415
views
Answer:
Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
8 weeks ago by
swbarnes2
14k
2
votes
0
replies
300
views
Comment:
Comment: Getting less DE genes when incorporating all samples
8 weeks ago by
swbarnes2
14k
1
vote
0
replies
438
views
Comment:
Comment: Count table statistical analysis
9 weeks ago by
swbarnes2
14k
1
vote
1
reply
521
views
Comment:
Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
10 weeks ago by
swbarnes2
14k
0
votes
0
replies
521
views
Answer:
Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
10 weeks ago by
swbarnes2
14k
1
vote
0
replies
567
views
Comment:
Comment: Three fastq files
10 weeks ago by
swbarnes2
14k
0
votes
0
replies
455
views
Comment:
Comment: Differential gene expression design using Deseq2
10 weeks ago by
swbarnes2
14k
0
votes
1
reply
1.0k
views
Comment:
Comment: Expression analysis of LncRNA from RNA-seq data
11 weeks ago by
swbarnes2
14k
0
votes
1
reply
1.0k
views
Comment:
Comment: Expression analysis of LncRNA from RNA-seq data
11 weeks ago by
swbarnes2
14k
0
votes
0
replies
531
views
Answer:
Answer: Help interpreting Samtools Flagstat results
11 weeks ago by
swbarnes2
14k
0
votes
0
replies
445
views
Comment:
Comment: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by
swbarnes2
14k
0
votes
1
reply
445
views
Answer:
Answer: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by
swbarnes2
14k
0
votes
0
replies
630
views
Comment:
Comment: No tumour cells in clustering of tumor sample?!
3 months ago by
swbarnes2
14k
0
votes
0
replies
667
views
Comment:
Comment: DESeq2 heatmap with low baseMean values
3 months ago by
swbarnes2
14k
0
votes
1
reply
667
views
Comment:
Comment: DESeq2 heatmap with low baseMean values
3 months ago by
swbarnes2
14k
1
vote
0
replies
307
views
Answer:
Answer: Interpretation of output from MiXCR TCR sequencing
3 months ago by
swbarnes2
14k
0
votes
0
replies
342
views
Answer:
Answer: Strand information from reverse stranded RNA-seq
3 months ago by
swbarnes2
14k
0
votes
0
replies
583
views
Comment:
Comment: bcl2fastq problems with the yield
4 months ago by
swbarnes2
14k
0
votes
1
reply
583
views
Answer:
Answer: bcl2fastq problems with the yield
4 months ago by
swbarnes2
14k
1
vote
1
reply
631
views
Comment:
Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
4 months ago by
swbarnes2
14k
1
vote
0
replies
454
views
Answer:
Answer: Are 10x cellranger-arc ATAC bam files deduplicated?
4 months ago by
swbarnes2
14k
1
vote
0
replies
385
views
Answer:
Answer: Bulk and Single Cell RNA-seq online course
4 months ago by
swbarnes2
14k
0
votes
0
replies
791
views
Answer:
Answer: STAR ALIGNMENT
5 months ago by
swbarnes2
14k
0
votes
0
replies
791
views
Comment:
Comment: STAR ALIGNMENT
5 months ago by
swbarnes2
14k
0
votes
1
reply
901
views
Answer:
Answer: Handling multiple fastq files per sample, per lane, per read out of the Cellrang
5 months ago by
swbarnes2
14k
0
votes
1
reply
804
views
Comment:
Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
5 months ago by
swbarnes2
14k
0
votes
0
replies
728
views
Answer:
Answer: RNAseq how to map Mouse+Virus Genome with STAR
5 months ago by
swbarnes2
14k
1
vote
0
replies
931
views
Comment:
Comment: deal with PCA and my samples
5 months ago by
swbarnes2
14k
2
votes
0
replies
718
views
Answer:
Answer: batch correction in DESeq2
5 months ago by
swbarnes2
14k
0
votes
1
reply
1.2k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by
swbarnes2
14k
1,985 results • Page
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