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Comment: Comment: Linear regression vs DESeq2 models for DEG analysis
5 days ago by swbarnes2 15k
2
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4.1k
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Answer: Answer: Linear regression vs DESeq2 models for DEG analysis
6 days ago by swbarnes2 15k
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6.5k
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Comment: Comment: Issue with renaming genes in expression matrix for heatmap in R
25 days ago by swbarnes2 15k
3
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5.9k
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Answer: Answer: DESeq2 time-series - full model matrix is less than full rank
25 days ago by swbarnes2 15k
2
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1
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3.8k
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Answer: Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
5 weeks ago by swbarnes2 15k
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12k
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Answer: Answer: RNA-Seq - Strand-specific coverage for a paired library
5 weeks ago by swbarnes2 15k
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1
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13k
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Answer: Answer: Asking for unmapped genes in RNA sequencing via Galaxy
5 weeks ago by swbarnes2 15k
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798
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Comment: Comment: How to assess differential gene expression over gradient of treatment levels wit
7 weeks ago by swbarnes2 15k
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1
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933
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Answer: Answer: STAR alignment to small fasta file failing
9 weeks ago by swbarnes2 15k
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1
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856
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Comment: Comment: How do I interpert PCA before differential expression analysis
10 weeks ago by swbarnes2 15k
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728
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Comment: Comment: PCA interpretation
12 weeks ago by swbarnes2 15k
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518
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Answer: Answer: Deg Difference in Deseq2
3 months ago by swbarnes2 15k
2
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628
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Answer: Answer: Bootstrapping in RNA-seq
3 months ago by swbarnes2 15k
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826
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Answer: Answer: Why little difference in RNAseq alignment when flipping forward and reverse stra
3 months ago by swbarnes2 15k
3
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2
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1.1k
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Answer: Answer: DESeq2 design for differential expression with 2 timepoints and 2 controls
3 months ago by swbarnes2 15k
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0
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1.1k
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Comment: Comment: Different comparisons in RNASeq Analysis
3 months ago by swbarnes2 15k
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1
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1.1k
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Comment: Comment: Different comparisons in RNASeq Analysis
3 months ago by swbarnes2 15k
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0
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1.1k
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Comment: Comment: Different comparisons in RNASeq Analysis
3 months ago by swbarnes2 15k
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1
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1.1k
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Answer: Answer: Different comparisons in RNASeq Analysis
3 months ago by swbarnes2 15k
0
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0
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627
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Answer: Answer: Batch correction without biological covariates
4 months ago by swbarnes2 15k
2
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0
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965
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Comment: Comment: finding gene sequence from WGS data
4 months ago by swbarnes2 15k
2
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1
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965
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Answer: Answer: finding gene sequence from WGS data
4 months ago by swbarnes2 15k
2
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1
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1000
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Answer: Answer: No index in the undetermined fastq file
4 months ago by swbarnes2 15k
1
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0
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962
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Answer: Answer: Heatmap of rnaseq data with z-score scale
4 months ago by swbarnes2 15k
1
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0
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759
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Answer: Answer: Trimmomatic command
4 months ago by swbarnes2 15k
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1
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1.8k
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Answer: Answer: Heatmap of a transformed deseq object with pheatmap
4 months ago by swbarnes2 15k
0
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0
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649
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Comment: Comment: Galaxy + RStudio
5 months ago by swbarnes2 15k
2
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1
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993
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Answer: Answer: Batch effect
5 months ago by swbarnes2 15k
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0
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1.4k
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Answer: Answer: Batch correction RNA-seq analysis
6 months ago by swbarnes2 15k
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0
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2.8k
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Answer: Answer: Should I process two complete sets of 10x single-cell multiomics sequencing file
6 months ago by swbarnes2 15k
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1
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1.4k
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Comment: Comment: Question about an alignment
6 months ago by swbarnes2 15k
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1
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1.4k
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Comment: Comment: Question about an alignment
6 months ago by swbarnes2 15k
1
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1
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1.4k
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Answer: Answer: Question about an alignment
6 months ago by swbarnes2 15k
2
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0
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1.1k
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Answer: Answer: Using bulk RNA-seq DE results to perform PCA in single cell RNA-seq
6 months ago by swbarnes2 15k
1
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0
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1.4k
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Answer: Answer: Heatmap problem in R
6 months ago by swbarnes2 15k
1
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0
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907
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Comment: Comment: Is there too little variation to detect meaningful gene changes?
6 months ago by swbarnes2 15k
2
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1
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798
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Answer: Answer: How to assess differential gene expression over gradient of treatment levels wit
7 months ago by swbarnes2 15k
1
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0
replies
1.3k
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Answer: Answer: Do you agree with the practice of combing TCGA with GTEx?
7 months ago by swbarnes2 15k
1
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1
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583
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Answer: Answer: DEseq2: Advice for model (double interaction ?)
7 months ago by swbarnes2 15k
0
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1
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633
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Answer: Answer: Gene level expression versus variant-level expression
7 months ago by swbarnes2 15k
1
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1
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855
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Answer: Answer: RNA variant calling - SNP and indels files
7 months ago by swbarnes2 15k
0
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0
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851
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Answer: Answer: Should I not have any adapters after trimming?
7 months ago by swbarnes2 15k
1
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0
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1.0k
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Answer: Answer: Multiple fail points in fastqc file
7 months ago by swbarnes2 15k
1
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1
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1.6k
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Answer: Answer: Regex in umi-tools doesn't identify pattern in non-beginning positions
7 months ago by swbarnes2 15k
2
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0
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1.3k
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Answer: Answer: 'Model matrix not full rank'
8 months ago by swbarnes2 15k
0
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1
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719
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Answer: Answer: RSEM and STAR
8 months ago by swbarnes2 15k
0
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1
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1.7k
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Answer: Answer: Parsing error in sam file when converting to bam
8 months ago by swbarnes2 15k
0
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0
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1.2k
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Answer: Answer: Sample-level demultiplex raw FASTQ file
9 months ago by swbarnes2 15k
0
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0
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2.3k
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Answer: Answer: cellranger error fix GTF
9 months ago by swbarnes2 15k
2
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2
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2.6k
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Comment: Comment: undermined fastq and top unknown barcodes
9 months ago by swbarnes2 15k
2,119 results • Page 1 of 43
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