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Comment: Comment: Finding differences between individual patients in a time-series RNA-seq?
2 days ago by swbarnes2 15k
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1
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565
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Comment: Comment: Comparison of different RNAseq data sets
15 days ago by swbarnes2 15k
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331
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Answer: Answer: Include plasmid sequences in RNA-seq differential expression analysis for bacter
18 days ago by swbarnes2 15k
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561
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Comment: Comment: Batch correction with ComBat for samples from multiple sampling sites
18 days ago by swbarnes2 15k
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797
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Comment: Comment: Obtaining DESeq2 LFC values for Loadings of Principal Components
19 days ago by swbarnes2 15k
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4.5k
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Comment: Comment: Linear regression vs DESeq2 models for DEG analysis
7 weeks ago by swbarnes2 15k
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4.5k
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Answer: Answer: Linear regression vs DESeq2 models for DEG analysis
7 weeks ago by swbarnes2 15k
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6.8k
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Comment: Comment: Issue with renaming genes in expression matrix for heatmap in R
10 weeks ago by swbarnes2 15k
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6.0k
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Answer: Answer: DESeq2 time-series - full model matrix is less than full rank
10 weeks ago by swbarnes2 15k
2
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1
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3.9k
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Answer: Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
12 weeks ago by swbarnes2 15k
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12k
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Answer: Answer: RNA-Seq - Strand-specific coverage for a paired library
12 weeks ago by swbarnes2 15k
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1
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13k
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Answer: Answer: Asking for unmapped genes in RNA sequencing via Galaxy
12 weeks ago by swbarnes2 15k
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913
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Comment: Comment: How to assess differential gene expression over gradient of treatment levels wit
3 months ago by swbarnes2 15k
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1
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1.1k
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Answer: Answer: STAR alignment to small fasta file failing
3 months ago by swbarnes2 15k
0
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1
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983
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Comment: Comment: How do I interpert PCA before differential expression analysis
4 months ago by swbarnes2 15k
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0
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997
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Comment: Comment: PCA interpretation
4 months ago by swbarnes2 15k
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0
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586
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Answer: Answer: Deg Difference in Deseq2
4 months ago by swbarnes2 15k
2
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0
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732
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Answer: Answer: Bootstrapping in RNA-seq
5 months ago by swbarnes2 15k
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970
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Answer: Answer: Why little difference in RNAseq alignment when flipping forward and reverse stra
5 months ago by swbarnes2 15k
3
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2
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1.3k
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Answer: Answer: DESeq2 design for differential expression with 2 timepoints and 2 controls
5 months ago by swbarnes2 15k
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0
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1.3k
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Comment: Comment: Different comparisons in RNASeq Analysis
5 months ago by swbarnes2 15k
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1
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1.3k
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Comment: Comment: Different comparisons in RNASeq Analysis
5 months ago by swbarnes2 15k
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0
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1.3k
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Comment: Comment: Different comparisons in RNASeq Analysis
5 months ago by swbarnes2 15k
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1
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1.3k
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Answer: Answer: Different comparisons in RNASeq Analysis
5 months ago by swbarnes2 15k
0
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0
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697
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Answer: Answer: Batch correction without biological covariates
5 months ago by swbarnes2 15k
2
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0
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1.1k
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Comment: Comment: finding gene sequence from WGS data
5 months ago by swbarnes2 15k
2
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1
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1.1k
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Answer: Answer: finding gene sequence from WGS data
5 months ago by swbarnes2 15k
2
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1
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1.2k
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Answer: Answer: No index in the undetermined fastq file
6 months ago by swbarnes2 15k
1
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0
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1.1k
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Answer: Answer: Heatmap of rnaseq data with z-score scale
6 months ago by swbarnes2 15k
1
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0
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883
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Answer: Answer: Trimmomatic command
6 months ago by swbarnes2 15k
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1
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2.2k
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Answer: Answer: Heatmap of a transformed deseq object with pheatmap
6 months ago by swbarnes2 15k
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0
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739
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Comment: Comment: Galaxy + RStudio
7 months ago by swbarnes2 15k
2
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1
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1.1k
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Answer: Answer: Batch effect
7 months ago by swbarnes2 15k
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0
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1.7k
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Answer: Answer: Batch correction RNA-seq analysis
7 months ago by swbarnes2 15k
0
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0
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3.1k
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Answer: Answer: Should I process two complete sets of 10x single-cell multiomics sequencing file
7 months ago by swbarnes2 15k
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1
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1.6k
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Comment: Comment: Question about an alignment
8 months ago by swbarnes2 15k
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1
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1.6k
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Comment: Comment: Question about an alignment
8 months ago by swbarnes2 15k
1
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1
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1.6k
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Answer: Answer: Question about an alignment
8 months ago by swbarnes2 15k
2
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0
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1.2k
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Answer: Answer: Using bulk RNA-seq DE results to perform PCA in single cell RNA-seq
8 months ago by swbarnes2 15k
1
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0
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1.6k
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Answer: Answer: Heatmap problem in R
8 months ago by swbarnes2 15k
1
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0
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1.1k
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Comment: Comment: Is there too little variation to detect meaningful gene changes?
8 months ago by swbarnes2 15k
2
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1
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913
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Answer: Answer: How to assess differential gene expression over gradient of treatment levels wit
8 months ago by swbarnes2 15k
1
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0
replies
1.4k
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Answer: Answer: Do you agree with the practice of combing TCGA with GTEx?
8 months ago by swbarnes2 15k
1
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1
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662
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Answer: Answer: DEseq2: Advice for model (double interaction ?)
8 months ago by swbarnes2 15k
0
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1
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739
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Answer: Answer: Gene level expression versus variant-level expression
8 months ago by swbarnes2 15k
1
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1
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1.0k
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Answer: Answer: RNA variant calling - SNP and indels files
9 months ago by swbarnes2 15k
0
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0
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948
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Answer: Answer: Should I not have any adapters after trimming?
9 months ago by swbarnes2 15k
1
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0
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1.2k
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Answer: Answer: Multiple fail points in fastqc file
9 months ago by swbarnes2 15k
1
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1
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1.9k
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Answer: Answer: Regex in umi-tools doesn't identify pattern in non-beginning positions
9 months ago by swbarnes2 15k
2
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0
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1.5k
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Answer: Answer: 'Model matrix not full rank'
9 months ago by swbarnes2 15k
2,124 results • Page 1 of 43
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