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2
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1
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2.0k
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Answer: Answer: unsorting a bam file
3.5 years ago by swbarnes2 15k
0
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1
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849
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Comment: Comment: igv and bam file
3.5 years ago by swbarnes2 15k
1
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0
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1.9k
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Answer: Answer: How to perform VST on my filtered counts data
3.5 years ago by swbarnes2 15k
0
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0
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1.9k
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Comment: Comment: Extract counts from paired end bam files
3.6 years ago by swbarnes2 15k
1
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0
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870
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Comment: Comment: Cellranger count fails at chunks_read stage
3.6 years ago by swbarnes2 15k
0
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0
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3.7k
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Comment: Comment: STAR alignment error: unrecognized parameter name "genomeType" in input "genomeP
3.6 years ago by swbarnes2 15k
0
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1
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3.7k
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Answer: Answer: STAR alignment error: unrecognized parameter name "genomeType" in input "genomeP
3.6 years ago by swbarnes2 15k
3
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2
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6.2k
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Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
3.6 years ago by swbarnes2 15k
0
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0
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2.1k
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Comment: Comment: Why so much variability in RNA-seq technical replicates?
3.6 years ago by swbarnes2 15k
0
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1
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2.1k
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Comment: Comment: Why so much variability in RNA-seq technical replicates?
3.6 years ago by swbarnes2 15k
1
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0
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1.8k
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Answer: Answer: Help with DESeq2 output
3.6 years ago by swbarnes2 15k
0
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1
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760
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Answer: Answer: DESeqg design formula options
3.6 years ago by swbarnes2 15k
1
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1
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6.0k
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Comment: Comment: How to load .txt files to R and make Seurat object ?
3.6 years ago by swbarnes2 15k
1
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0
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1.2k
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Answer: Answer: DGE adjusted p-value
3.6 years ago by swbarnes2 15k
0
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1
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969
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Comment: Comment: May I run scRNA-seq data in Seurat without barcode file?
3.7 years ago by swbarnes2 15k
1
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1
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2.3k
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Answer: Answer: Compare RNA seq mapping results from STAR and BWA in R
3.7 years ago by swbarnes2 15k
0
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0
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4.1k
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Comment: Comment: I wonder if someone please explain what secondary, supplementary, duplicates and
3.7 years ago by swbarnes2 15k
0
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0
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3.0k
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Answer: Answer: highlight subset of cells on tSNE plot
3.7 years ago by swbarnes2 15k
1
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1
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1.2k
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Answer: Answer: Help for PCA analysis
3.7 years ago by swbarnes2 15k
0
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0
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2.5k
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Comment: Comment: How to compare differential expression of same genes between two groups?
3.7 years ago by swbarnes2 15k
0
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1
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1.9k
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Comment: Comment: CellRanger - No input FASTQs were found for the requested parameters
3.7 years ago by swbarnes2 15k
3
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2
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2.3k
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Answer: Answer: RC an entire bam file?
3.7 years ago by swbarnes2 15k
2
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0
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760
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Answer: Answer: sample split in multiple flowcells and lanes
3.7 years ago by swbarnes2 15k
0
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1
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2.5k
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Comment: Comment: How to compare differential expression of same genes between two groups?
3.7 years ago by swbarnes2 15k
0
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0
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2.5k
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Comment: Comment: How to compare differential expression of same genes between two groups?
3.7 years ago by swbarnes2 15k
0
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0
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2.5k
views
Comment: Comment: How to compare differential expression of same genes between two groups?
3.7 years ago by swbarnes2 15k
0
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1
reply
2.5k
views
Comment: Comment: How to compare differential expression of same genes between two groups?
3.7 years ago by swbarnes2 15k
0
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0
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1.5k
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Comment: Comment: Generating Dataset for DESeq2 Analysis Issue
3.7 years ago by swbarnes2 15k
0
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0
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1.5k
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Comment: Comment: How to deal with batch effects of multiple datasets?
3.7 years ago by swbarnes2 15k
0
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0
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821
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Answer: Answer: Map hg19 whole exome data to exon number by gene
3.7 years ago by swbarnes2 15k
3
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1
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1.1k
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Answer: Answer: Creating gene counts for differential gene expression analysis
3.7 years ago by swbarnes2 15k
0
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0
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1.7k
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Comment: Comment: Loop through columns to generate PCA from DESeq2 data
3.7 years ago by swbarnes2 15k
0
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0
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1.2k
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Comment: Comment: I have RAW Illumina Paired-end sequence in FASTQ format. Can someone please guid
3.7 years ago by swbarnes2 15k
0
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0
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1.4k
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Comment: Comment: PCA does not show distinction in groups
3.7 years ago by swbarnes2 15k
0
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0
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2.4k
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Comment: Comment: bcl2fastq error with RunInfo.xml
3.7 years ago by swbarnes2 15k
1
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1
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3.5k
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Answer: Answer: Change chromosome notation in bam file
3.7 years ago by swbarnes2 15k
4
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1
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1.4k
views
Answer: Answer: PCA does not show distinction in groups
3.7 years ago by swbarnes2 15k
0
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0
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4.5k
views
Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
3.7 years ago by swbarnes2 15k
0
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0
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1.4k
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Comment: Comment: How to get rid of mis-assigned reads without having bcl files or index informati
3.7 years ago by swbarnes2 15k
2
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0
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1.3k
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Answer: Answer: RNAseq and future analysis
3.7 years ago by swbarnes2 15k
0
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0
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4.4k
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Comment: Comment: What does an amino acid sequence that does not start with methionine mean?
3.8 years ago by swbarnes2 15k
1
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1
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4.4k
views
Answer: Answer: What does an amino acid sequence that does not start with methionine mean?
3.8 years ago by swbarnes2 15k
1
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0
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856
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Answer: Answer: How do i perform DGE if based on PCA the samples are separated along PC2 and not
3.8 years ago by swbarnes2 15k
0
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0
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1.2k
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Answer: Answer: The Difference Between Genome Reference(scRNAseq) And Transcriptome Reference(bu
3.8 years ago by swbarnes2 15k
0
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0
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977
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Comment: Comment: raw data normalization
3.8 years ago by swbarnes2 15k
0
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0
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2.3k
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Answer: Answer: How can I trim the primer and mask it with the original primer sequences?
3.8 years ago by swbarnes2 15k
0
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2
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1.5k
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Answer: Answer: Extract gene related reads from a whole run
3.8 years ago by swbarnes2 15k
2
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0
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906
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Answer: Answer: Genome sequencing clinical interpretation help
3.8 years ago by swbarnes2 15k
0
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0
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1.9k
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Answer: Answer: DESeq2 count table columns do not normalize
3.8 years ago by swbarnes2 15k
0
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0
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2.4k
views
Comment: Comment: How does BWA handle duplications?
3.8 years ago by swbarnes2 15k
2,124 results • Page 10 of 43
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