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Comment: Comment: Should I expect high duplicate read frequency in my scRNA fastq's?
4.2 years ago by swbarnes2 15k
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Answer: Answer: Problem with BAM file headers
4.2 years ago by swbarnes2 15k
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Comment: Comment: Different Gene Lengths and Expected Gene Lengths from Sample to Sample
4.2 years ago by swbarnes2 15k
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Comment: Comment: How to count gene expression level in R?
4.2 years ago by swbarnes2 15k
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Answer: Answer: How to extract unique fastq seq. from BAM, irrespective of FLAG value ?
4.2 years ago by swbarnes2 15k
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Answer: Answer: How to fasterq-dump 10x genomics snATACseq fastq from SRA
4.2 years ago by swbarnes2 15k
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Comment: Comment: Output of samtools view, what does the third column actually represent?
4.2 years ago by swbarnes2 15k
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6.6k
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Answer: Answer: Output of samtools view, what does the third column actually represent?
4.2 years ago by swbarnes2 15k
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Comment: Comment: Genewiz gave me bam files instead of fasta files- can I convert bam to fasta to
4.2 years ago by swbarnes2 15k
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Comment: Comment: relationship between DE-genes and DE-trascripts in deseq2
4.2 years ago by swbarnes2 15k
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Comment: Comment: DEGs with uninsteresed sample files
4.2 years ago by swbarnes2 15k
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Answer: Answer: DEGs with uninsteresed sample files
4.2 years ago by swbarnes2 15k
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Comment: Comment: Counts all read zero after alignment?
4.3 years ago by swbarnes2 15k
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3.1k
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Answer: Answer: Missing read group in BAM files
4.3 years ago by swbarnes2 15k
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2.0k
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Comment: Comment: MarkduplicatesSpark How to speed-up ?
4.3 years ago by swbarnes2 15k
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Answer: Answer: RNA Seq
4.3 years ago by swbarnes2 15k
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Comment: Comment: Counts all read zero after alignment?
4.3 years ago by swbarnes2 15k
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Comment: Comment: how htseq-count counts unstranded RNA-seq data
4.3 years ago by swbarnes2 15k
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Answer: Answer: how htseq-count counts unstranded RNA-seq data
4.3 years ago by swbarnes2 15k
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4.7k
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Comment: Comment: STAR split reads into two strands
4.3 years ago by swbarnes2 15k
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4.7k
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Comment: Comment: STAR split reads into two strands
4.3 years ago by swbarnes2 15k
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4.7k
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Comment: Comment: STAR split reads into two strands
4.3 years ago by swbarnes2 15k
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4.7k
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Comment: Comment: STAR split reads into two strands
4.3 years ago by swbarnes2 15k
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Answer: Answer: fastq file format
4.3 years ago by swbarnes2 15k
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4.7k
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Comment: Comment: STAR split reads into two strands
4.3 years ago by swbarnes2 15k
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Comment: Comment: Error in DESeqDataSetFromMatrix Function in DESeq Library
4.3 years ago by swbarnes2 15k
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Answer: Answer: How do we process Kallisto output (continuous real values) for DESEQ2 analysis (
4.3 years ago by swbarnes2 15k
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Answer: Answer: Change STAR Parameters in rsem-calculate-expression
4.3 years ago by swbarnes2 15k
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7.6k
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Answer: Answer: featureCounts parameters for RNA-Seq
4.3 years ago by swbarnes2 15k
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Comment: Comment: Combine haploid fastq's into diploid "individuals"
4.3 years ago by swbarnes2 15k
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Answer: Answer: How to download this genome?
4.3 years ago by swbarnes2 15k
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1.9k
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Answer: Answer: Same strand, same QNAME different FLAG?
4.3 years ago by swbarnes2 15k
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2.5k
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Comment: Comment: ERROR [mem_sam_pe] paired reads have different names -- during binning in metaW
4.3 years ago by swbarnes2 15k
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Answer: Answer: Rows of read count files
4.3 years ago by swbarnes2 15k
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Answer: Answer: Strand specific library
4.3 years ago by swbarnes2 15k
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Answer: Answer: DESeq2 results difference using contrast and single conditions
4.3 years ago by swbarnes2 15k
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2.3k
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Answer: Answer: Can someone suggest any python script or any script so that I can make modificat
4.3 years ago by swbarnes2 15k
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1.5k
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Comment: Comment: Featurecount mapping is less
4.3 years ago by swbarnes2 15k
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Answer: Answer: Are there risks to use a GRCh38 gtf and a hg19 fa in alignment?
4.3 years ago by swbarnes2 15k
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Comment: Comment: BWA error: [bwa_idx_build] fail to open file 'ref.fa' : No such file or director
4.3 years ago by swbarnes2 15k
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2.3k
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Answer: Answer: Abnormal fastq lines
4.4 years ago by swbarnes2 15k
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2
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1.2k
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Comment: Comment: Differential expression design considerations
4.4 years ago by swbarnes2 15k
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Comment: Comment: RNA sequence analyzing data using R after DESeq2 (illumina)
4.4 years ago by swbarnes2 15k
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14k
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Comment: Comment: How to input data for DESeq2 from individual HTSeq count?
4.4 years ago by swbarnes2 15k
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1
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5.4k
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Comment: Comment: The exon numbers of each transcript,
4.4 years ago by swbarnes2 15k
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14k
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Comment: Comment: How to input data for DESeq2 from individual HTSeq count?
4.4 years ago by swbarnes2 15k
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1.9k
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Comment: Comment: Extremely high adapter content and low alignment rate in RNAseq
4.4 years ago by swbarnes2 15k
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1
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1.9k
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Answer: Answer: Extremely high adapter content and low alignment rate in RNAseq
4.4 years ago by swbarnes2 15k
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Comment: Comment: Use bioinformatics tool in iphone 7
4.4 years ago by swbarnes2 15k
1
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1
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2.6k
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Comment: Comment: RNA sequence analyzing data using R after DESeq2 (illumina)
4.4 years ago by swbarnes2 15k
2,124 results • Page 14 of 43
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