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Comment: Comment: Extract data from GTF file
4.5 years ago by swbarnes2 15k
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Answer: Answer: Pair-End Sequencing Algorithm Confusion (Illumina)
4.5 years ago by swbarnes2 15k
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Comment: Comment: Header conflicts in concatenated FASTQ file?
4.5 years ago by swbarnes2 15k
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Comment: Comment: Header conflicts in concatenated FASTQ file?
4.5 years ago by swbarnes2 15k
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Comment: Comment: Rsamtools: get nucleotide of read ID X at position P
4.5 years ago by swbarnes2 15k
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Comment: Comment: STAR Aligner --quantMode GeneCounts
4.5 years ago by swbarnes2 15k
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Answer: Answer: STAR Aligner --quantMode GeneCounts
4.5 years ago by swbarnes2 15k
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Comment: Comment: Ballgown R Package
4.5 years ago by swbarnes2 15k
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Answer: Answer: Ballgown R Package
4.5 years ago by swbarnes2 15k
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Answer: Answer: How to combine datasets from different sequencing platforms?
4.5 years ago by swbarnes2 15k
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Comment: Comment: Help with rownames in DESeq2
4.5 years ago by swbarnes2 15k
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3.0k
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Comment: Comment: Just 1 gene is upregulated ?? --DESeq2---
4.5 years ago by swbarnes2 15k
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Answer: Answer: Subsetting BAM by positions
4.5 years ago by swbarnes2 15k
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Answer: Answer: [CONCEPTUAL] Mutant analysis - should the t-test be paired or unpaired?
4.5 years ago by swbarnes2 15k
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5.4k
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Answer: Answer: DESeq2 count matrix read in
4.5 years ago by swbarnes2 15k
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1.2k
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Answer: Answer: Error in vsd_adjusted_log2[rownames(subset(res, !is.na(padj) & padj < : subs
4.5 years ago by swbarnes2 15k
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7.8k
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Comment: Comment: Merging FASTQ files with Cellranger
4.5 years ago by swbarnes2 15k
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7.8k
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Comment: Comment: Merging FASTQ files with Cellranger
4.5 years ago by swbarnes2 15k
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7.8k
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Answer: Answer: Merging FASTQ files with Cellranger
4.5 years ago by swbarnes2 15k
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1.6k
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Answer: Answer: T-test analysis for gene expression comparison
4.5 years ago by swbarnes2 15k
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Answer: Answer: How to visualise differential expression analysis
4.5 years ago by swbarnes2 15k
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1.7k
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Comment: Comment: RNA Seq
4.5 years ago by swbarnes2 15k
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Answer: Answer: How can I use log2 RPM data(RNA-seq) to find differentially expressed genes?
4.5 years ago by swbarnes2 15k
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1.7k
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Answer: Answer: Differential abundance analysis for bulk TCR-seq data
4.5 years ago by swbarnes2 15k
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Comment: Comment: edgeR batch correction
4.5 years ago by swbarnes2 15k
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2.7k
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Comment: Comment: Low no_Feature value after using STAR for alignment
4.5 years ago by swbarnes2 15k
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2.7k
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Comment: Comment: Low no_Feature value after using STAR for alignment
4.5 years ago by swbarnes2 15k
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0
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1.7k
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Comment: Comment: What is the procedure to install tophat
4.5 years ago by swbarnes2 15k
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4.3k
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Comment: Comment: How to convert .txt to .vcf?
4.5 years ago by swbarnes2 15k
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Comment: Comment: DESeq2 + Rsubread: multiple rows for the same transcript ID?? Annotationdbi mapI
4.5 years ago by swbarnes2 15k
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Comment: Comment: DEseq2 AND edgeR
4.5 years ago by swbarnes2 15k
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2.7k
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Comment: Comment: Low no_Feature value after using STAR for alignment
4.5 years ago by swbarnes2 15k
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1
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2.7k
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Answer: Answer: Low no_Feature value after using STAR for alignment
4.6 years ago by swbarnes2 15k
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2.8k
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Comment: Comment: reference fasta creation
4.6 years ago by swbarnes2 15k
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3.3k
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Answer: Answer: DESeq2 multiple group comparisons
4.6 years ago by swbarnes2 15k
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3.1k
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Answer: Answer: What is the output of rna-seq alignment to reference transcriptome (FASTA+GTF) l
4.6 years ago by swbarnes2 15k
2
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5.6k
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Answer: Answer: DESeq2 design for two variables and pairwise comparisons
4.6 years ago by swbarnes2 15k
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1.7k
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Comment: Comment: Blast Output with only one line
4.6 years ago by swbarnes2 15k
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2
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3.2k
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Answer: Answer: Samtools view does not output all reads
4.6 years ago by swbarnes2 15k
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2.5k
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Comment: Comment: DESeq2 comparison two cell types and two genotypes
4.6 years ago by swbarnes2 15k
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1
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2.8k
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Comment: Comment: how to understand the P value of the Deseq2 results
4.6 years ago by swbarnes2 15k
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2.5k
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Answer: Answer: DESeq2 comparison two cell types and two genotypes
4.6 years ago by swbarnes2 15k
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970
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Comment: Comment: How to normalize 2 samples having 6 separate treatments
4.6 years ago by swbarnes2 15k
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964
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Answer: Answer: Does this output indicate my bam is paired end?
4.6 years ago by swbarnes2 15k
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1.7k
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Answer: Answer: How to filter reads only with single SNV
4.6 years ago by swbarnes2 15k
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5.9k
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Answer: Answer: samtools/bcftools mpileup -B option: to use it or not in order to reduce the occ
4.6 years ago by swbarnes2 15k
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1
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4.9k
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Comment: Comment: Understanding the ColData Matrix
4.6 years ago by swbarnes2 15k
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2.0k
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Comment: Comment: Cellranger count.srun issues
4.6 years ago by swbarnes2 15k
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866
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Answer: Answer: Combining results tables to plot automatecally
4.6 years ago by swbarnes2 15k
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888
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Answer: Answer: RNA seq experiment design - two in house cell lines, data analysis with CCLE
4.6 years ago by swbarnes2 15k
2,124 results • Page 16 of 43
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