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Comment: Comment: Error in FUN(left, right) : non-numeric argument to binary operator in RStudio
4.6 years ago by swbarnes2 15k
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Answer: Answer: Do I need to download any specific adapters for Illumina small RNA sequencing ki
4.6 years ago by swbarnes2 15k
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Answer: Answer: Deseq2 time interaction term
4.6 years ago by swbarnes2 15k
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Answer: Answer: why my volcano plot looks strange?
4.6 years ago by swbarnes2 15k
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Answer: Answer: Plotting Differential Induced Genes across timepoints in DESEQ2
4.6 years ago by swbarnes2 15k
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Answer: Answer: Variant calling from comparison of assembled genomes where there is only one r
4.6 years ago by swbarnes2 15k
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Comment: Comment: How to align single end multiple lane data using Hisat2?
4.6 years ago by swbarnes2 15k
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Answer: Answer: How to align single end multiple lane data using Hisat2?
4.6 years ago by swbarnes2 15k
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Comment: Comment: Python program that reads a fastq file and calculate Phred score
4.6 years ago by swbarnes2 15k
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Comment: Comment: Batch effects prevention
4.6 years ago by swbarnes2 15k
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Answer: Answer: How to add gene function/protein name, start and end position to DESeq2 results
4.6 years ago by swbarnes2 15k
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Answer: Answer: What are the disadvantages of increasing the sequencing depth of RNA-seq experim
4.6 years ago by swbarnes2 15k
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Answer: Answer: merge .fastq.gz files
4.6 years ago by swbarnes2 15k
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Comment: Comment: RSEM error: The adjacent two lines do not represent the two mates of a paired-en
4.7 years ago by swbarnes2 15k
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Answer: Answer: Clustering two different RNA-seq timeseries results to identify shared/opposite
4.7 years ago by swbarnes2 15k
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2.6k
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Comment: Comment: How can I create a count matrix?
4.7 years ago by swbarnes2 15k
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Answer: Answer: RSEM error: The adjacent two lines do not represent the two mates of a paired-en
4.7 years ago by swbarnes2 15k
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1.1k
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Answer: A: Post Alignment basic QC of RNA-Seq data
4.7 years ago by swbarnes2 15k
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820
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Answer: A: Deseq2 with opposite (dominant negative) design
4.7 years ago by swbarnes2 15k
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1.9k
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Comment: C: different read names in paired-end data
4.7 years ago by swbarnes2 15k
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Answer: A: How to export STAR alignment output files
4.7 years ago by swbarnes2 15k
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900
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Answer: A: How could I analyse the differential expression of a particular gene with RNA-se
4.7 years ago by swbarnes2 15k
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Comment: C: BCL2FASTQ Dual-Index Barcode Collisions - Is the i5 Index not considered when de
4.7 years ago by swbarnes2 15k
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1.2k
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Comment: C: How to demultiplex SmartSeq2 run where settings were set to one index instead of
4.7 years ago by swbarnes2 15k
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Answer: A: The problems when i map to genome by mapper.pl in miRDeep2
4.7 years ago by swbarnes2 15k
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Comment: C: Removing batch effects
4.7 years ago by swbarnes2 15k
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1
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957
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Answer: A: Bowtie: "Floating point exception: 8"
4.7 years ago by swbarnes2 15k
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2.0k
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Answer: A: Removing batch effects
4.7 years ago by swbarnes2 15k
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1
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1.3k
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Answer: A: Finding gene of interest in data downloaded from SRA
4.7 years ago by swbarnes2 15k
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892
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Answer: A: DESeq2 for specific genes
4.7 years ago by swbarnes2 15k
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1.8k
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Comment: C: Bacterial RNA-SEQ - Quality Control
4.7 years ago by swbarnes2 15k
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934
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Comment: C: Nesting a covariate for differential expression design
4.7 years ago by swbarnes2 15k
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Answer: A: Bacterial RNA-SEQ - Quality Control
4.7 years ago by swbarnes2 15k
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1
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2.4k
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Comment: C: Forward and reverse single cell data analysis
4.7 years ago by swbarnes2 15k
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2.4k
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Answer: A: Forward and reverse single cell data analysis
4.7 years ago by swbarnes2 15k
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3.7k
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Comment: C: Lanes in the context of RNA-SEQ data
4.7 years ago by swbarnes2 15k
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3.7k
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Comment: C: Lanes in the context of RNA-SEQ data
4.7 years ago by swbarnes2 15k
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1.8k
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Comment: C: Does the countToFPKM package work for single end RNA seq or its only for paired
4.7 years ago by swbarnes2 15k
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1.8k
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Comment: C: Cuffmerge Error: Converting GTF files to SAM
4.7 years ago by swbarnes2 15k
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2
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4.9k
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Comment: C: cellranger count error: No input FASTQs were found for the requested parameters.
4.7 years ago by swbarnes2 15k
3
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1
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2.3k
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Answer: A: How to record Seurat DE analysis efficiently?
4.8 years ago by swbarnes2 15k
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1.8k
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Comment: C: Exprimental design for DESeq2 or edger
4.8 years ago by swbarnes2 15k
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1
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1.8k
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Comment: C: Exprimental design for DESeq2 or edger
4.8 years ago by swbarnes2 15k
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1.8k
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Comment: C: Exprimental design for DESeq2 or edger
4.8 years ago by swbarnes2 15k
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Comment: C: Adding a gene to a GTF file
4.8 years ago by swbarnes2 15k
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1.7k
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Comment: C: DESeq multiple factor question
4.8 years ago by swbarnes2 15k
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1.8k
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Answer: A: deseq2 design with two variables
4.8 years ago by swbarnes2 15k
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1.8k
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Comment: C: deseq2 design with two variables
4.8 years ago by swbarnes2 15k
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11k
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Answer: A: Running featureCounts separately for each sample and merging results
4.8 years ago by swbarnes2 15k
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1
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1.8k
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Comment: C: How to improve the alignment performance in targeted sequencing data
4.8 years ago by swbarnes2 15k
2,124 results • Page 17 of 43
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