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Answer: A: How to improve the alignment performance in targeted sequencing data
4.8 years ago by swbarnes2 15k
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2.8k
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Comment: C: extracting fastq's from a vcf file
4.8 years ago by swbarnes2 15k
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Answer: A: Including 2 factors vs 1 factor in Design Formula for DESeq2
4.8 years ago by swbarnes2 15k
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Answer: A: how can I interpret DEG value and p value in RNAseq
4.8 years ago by swbarnes2 15k
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Comment: C: DESeqDataSetFromMatrix error: invalid 'row.names'
4.8 years ago by swbarnes2 15k
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Answer: A: Design in DESeq2: measruing effects of treatment while adjusting for sample type
4.8 years ago by swbarnes2 15k
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Answer: A: interprating PCA plot
4.8 years ago by swbarnes2 15k
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Comment: C: How to write it in R language?
4.8 years ago by swbarnes2 15k
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Comment: C: RNA-seq analysis of multiple patients with single sample each
4.8 years ago by swbarnes2 15k
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5.8k
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Comment: C: I need to extract the FASTA reads from a specific region from a chromosome in a
4.8 years ago by swbarnes2 15k
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5.8k
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Answer: A: I need to extract the FASTA reads from a specific region from a chromosome in a
4.8 years ago by swbarnes2 15k
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Answer: A: Compare Differences in a sequence between a SAM file and a FASTA file
4.8 years ago by swbarnes2 15k
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2.5k
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Comment: C: Error when trying to convert BAM file to FASTQ.
4.8 years ago by swbarnes2 15k
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2.5k
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Comment: C: Error when trying to sort unmapped reads in samtools.
4.8 years ago by swbarnes2 15k
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2.5k
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Comment: C: Error when trying to sort unmapped reads in samtools.
4.8 years ago by swbarnes2 15k
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1.4k
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Comment: C: ICGC Raw counts for RNA-Seq data
4.8 years ago by swbarnes2 15k
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2.5k
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Answer: A: Error when trying to sort unmapped reads in samtools.
4.8 years ago by swbarnes2 15k
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2.5k
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Comment: C: what should be view inside of SAM file?
4.8 years ago by swbarnes2 15k
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2.6k
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Answer: A: Why VEP doesn't take strand into account?
4.8 years ago by swbarnes2 15k
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2.2k
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Answer: A: Should I cluster and PCA the whole sample or only the genes of interest?
4.8 years ago by swbarnes2 15k
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1.5k
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Comment: C: DESeq2 model design for 1 condition versus two grouped conditions
4.8 years ago by swbarnes2 15k
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1.1k
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Comment: C: Removing warning FASTQC
4.8 years ago by swbarnes2 15k
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2.4k
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Answer: A: RNA-seq using DESeq2: quality control of replicates using PCA and heatmaps
4.8 years ago by swbarnes2 15k
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1.6k
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Answer: A: formatting issue in data for Upset plots
4.8 years ago by swbarnes2 15k
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1.5k
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Comment: C: IPA pathway for DESeq2 result
4.8 years ago by swbarnes2 15k
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1.4k
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Answer: A: Trimmomatic couldn't generate output file
4.9 years ago by swbarnes2 15k
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822
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Comment: A: removal batch effect
4.9 years ago by swbarnes2 15k
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2.8k
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Comment: C: BWA index is not working
4.9 years ago by swbarnes2 15k
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11k
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Comment: A: How to handle duplicate row names in R
4.9 years ago by swbarnes2 15k
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1.6k
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Answer: A: Design and contrast matrices for including batch effect
4.9 years ago by swbarnes2 15k
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1.6k
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Answer: A: Unexpected gene polymorphism using Salmon-tximeta-DESeq2
4.9 years ago by swbarnes2 15k
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1.1k
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Answer: A: RNA-seq design advices
4.9 years ago by swbarnes2 15k
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1.3k
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Comment: C: Create a single fastq ids in each row
4.9 years ago by swbarnes2 15k
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Answer: A: Differential expression analysis with few genes. What could have happened?
4.9 years ago by swbarnes2 15k
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Comment: C: How do you create a multiple reference genome in Hisat2?
4.9 years ago by swbarnes2 15k
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1.6k
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Comment: C: How do you create a multiple reference genome in Hisat2?
4.9 years ago by swbarnes2 15k
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2.7k
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Comment: C: Differential Expression Analysis with Salmon vs Genomic Aligners Like Star
4.9 years ago by swbarnes2 15k
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2.7k
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Answer: A: Differential Expression Analysis with Salmon vs Genomic Aligners Like Star
4.9 years ago by swbarnes2 15k
3
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6.4k
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Answer: A: 10x to cloupe
4.9 years ago by swbarnes2 15k
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848
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Comment: C: Finding which gene is missing in a column.
4.9 years ago by swbarnes2 15k
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4.1k
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Answer: A: Large Count Discrepancy of Key Gene Between STAR and HISAT2
4.9 years ago by swbarnes2 15k
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6.5k
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Comment: C: Sanger sequencing Result: Difference between forward and reverse DNA strands
4.9 years ago by swbarnes2 15k
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1
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6.5k
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Comment: C: Sanger sequencing Result: Difference between forward and reverse DNA strands
4.9 years ago by swbarnes2 15k
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1
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6.5k
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Comment: C: Sanger sequencing Result: Difference between forward and reverse DNA strands
4.9 years ago by swbarnes2 15k
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1.6k
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Comment: C: Mapping reads to circular references
4.9 years ago by swbarnes2 15k
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3.4k
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Comment: C: Trying to understand samtools -f and -F
4.9 years ago by swbarnes2 15k
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3.4k
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Comment: C: Trying to understand samtools -f and -F
4.9 years ago by swbarnes2 15k
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2.8k
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Comment: C: Quality Check of Samples and Biological Replicates
4.9 years ago by swbarnes2 15k
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6.7k
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Answer: A: Split paired-end reads BAM file into Forward and Reverse Strands
4.9 years ago by swbarnes2 15k
1
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1
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2.8k
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Answer: A: Quality Check of Samples and Biological Replicates
4.9 years ago by swbarnes2 15k
2,124 results • Page 18 of 43
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