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Comment: C: Get all DNAStrings from a StringSet as individual FASTA files with corresponding
4.9 years ago by swbarnes2 15k
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Answer: A: Get all DNAStrings from a StringSet as individual FASTA files with corresponding
4.9 years ago by swbarnes2 15k
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Answer: A: Different results from MDS and PCA plots for DE analysis
4.9 years ago by swbarnes2 15k
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Answer: A: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
5.0 years ago by swbarnes2 15k
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Answer: A: Query on htseq count
5.0 years ago by swbarnes2 15k
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Answer: A: Adapter sequences for stranded paired end data
5.0 years ago by swbarnes2 15k
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Comment: C: SAM file manipulation
5.0 years ago by swbarnes2 15k
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Comment: C: Demultiplexing with barcode at random location in sequence
5.0 years ago by swbarnes2 15k
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Answer: A: What happens if a UMI fragment has a PCR artefact?
5.0 years ago by swbarnes2 15k
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Answer: A: DESeq2 discrepancy between analysis.
5.0 years ago by swbarnes2 15k
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Comment: C: How to count the number of alignments in a bam file without using samtools?
5.0 years ago by swbarnes2 15k
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Answer: A: samtools index cannot index concatenated bam?
5.0 years ago by swbarnes2 15k
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Answer: A: Extract primer-containing reads from RNA-Seq
5.0 years ago by swbarnes2 15k
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1.2k
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Answer: A: "Bias" in NGS sequencing processing
5.0 years ago by swbarnes2 15k
2
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1.6k
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Answer: A: How to obtain unspliced tRNAs from FASTQ file
5.0 years ago by swbarnes2 15k
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Comment: C: biomaRt getSequence results of gene_exon in wrong order
5.0 years ago by swbarnes2 15k
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1.3k
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Answer: A: biomaRt getSequence results of gene_exon in wrong order
5.0 years ago by swbarnes2 15k
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1.7k
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Answer: A: Changing chromosome names in BAM files
5.0 years ago by swbarnes2 15k
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Comment: C: How to map longer reads against a local reference using Bowtie
5.0 years ago by swbarnes2 15k
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2.8k
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Comment: C: Help interpretating DESeq2 output
5.0 years ago by swbarnes2 15k
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2.8k
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Answer: A: Help interpretating DESeq2 output
5.0 years ago by swbarnes2 15k
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2.5k
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Comment: C: Quantifying abundances of transcripts using kallisto
5.0 years ago by swbarnes2 15k
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1.9k
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Answer: A: Batch effect correction
5.0 years ago by swbarnes2 15k
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1.9k
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Comment: C: Batch effect correction
5.0 years ago by swbarnes2 15k
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2.7k
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Answer: A: Converting tsv into bam file
5.0 years ago by swbarnes2 15k
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1.2k
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Comment: C: each strain has its own SNP (single nucleotide polymorphism) mutations in which
5.0 years ago by swbarnes2 15k
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Answer: A: difference between genotyping and sequencing ?
5.0 years ago by swbarnes2 15k
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2.5k
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Answer: A: Quantifying abundances of transcripts using kallisto
5.0 years ago by swbarnes2 15k
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2
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1.2k
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Answer: A: Running STAR on multiple replicates
5.0 years ago by swbarnes2 15k
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Answer: A: RNAseq RSEM and featurecounts
5.0 years ago by swbarnes2 15k
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2.5k
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Answer: A: does RSEM need STAR?
5.0 years ago by swbarnes2 15k
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5.0k
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Answer: A: How to filter out chromosome regions from a .bam file
5.0 years ago by swbarnes2 15k
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1.1k
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Answer: A: multiple samples differential expression analysis
5.0 years ago by swbarnes2 15k
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Answer: A: Finding Restriction Sites - Rosalind Problem
5.0 years ago by swbarnes2 15k
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1.1k
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Answer: A: Counts plot does not match fold change between groups
5.0 years ago by swbarnes2 15k
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960
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Comment: C: RNA-seq: thresholds for quality control & batch correction
5.0 years ago by swbarnes2 15k
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Answer: A: DESeq2: "model matrix is not full rank"
5.0 years ago by swbarnes2 15k
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3.1k
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Answer: A: which sequence adapter trimming tool should i use for my illumina 101pb reads ?
5.0 years ago by swbarnes2 15k
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8.0k
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Answer: A: Using ComBat-seq on transcript counts
5.0 years ago by swbarnes2 15k
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9.8k
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Comment: C: bcl2fastq --use-bases-mask error for dual index reads
5.0 years ago by swbarnes2 15k
2
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1.4k
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Answer: A: Expression Counts from Bam Files of miRNA-seq data
5.0 years ago by swbarnes2 15k
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9.8k
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Comment: C: bcl2fastq --use-bases-mask error for dual index reads
5.0 years ago by swbarnes2 15k
1
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0
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9.8k
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Comment: C: bcl2fastq --use-bases-mask error for dual index reads
5.0 years ago by swbarnes2 15k
0
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1
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8.8k
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Comment: C: How to assign read groups to bam files?
5.0 years ago by swbarnes2 15k
3
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4.5k
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Answer: A: Separating each cell in fastq file
5.0 years ago by swbarnes2 15k
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4.5k
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Comment: C: Separating each cell in fastq file
5.1 years ago by swbarnes2 15k
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4.2k
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Answer: A: combining fastq from different lanes
5.1 years ago by swbarnes2 15k
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1.1k
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Comment: C: ReadsPerGene.out.tab column one contains gene ID AND gene name
5.1 years ago by swbarnes2 15k
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8.8k
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Comment: C: How to assign read groups to bam files?
5.1 years ago by swbarnes2 15k
1
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1
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2.7k
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Comment: C: Help with Output of FASTA Files From Excel
5.1 years ago by swbarnes2 15k
2,124 results • Page 19 of 43
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