Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
862
views
Answer: Answer: RSEM and STAR
10 months ago by swbarnes2 15k
0
votes
1
reply
1.9k
views
Answer: Answer: Parsing error in sam file when converting to bam
10 months ago by swbarnes2 15k
0
votes
0
replies
1.5k
views
Answer: Answer: Sample-level demultiplex raw FASTQ file
10 months ago by swbarnes2 15k
0
votes
0
replies
2.6k
views
Answer: Answer: cellranger error fix GTF
10 months ago by swbarnes2 15k
2
votes
2
replies
2.9k
views
Comment: Comment: undermined fastq and top unknown barcodes
11 months ago by swbarnes2 15k
1
vote
1
reply
2.9k
views
Answer: Answer: undermined fastq and top unknown barcodes
11 months ago by swbarnes2 15k
0
votes
1
reply
2.1k
views
Answer: Answer: Counts after using feature counts is low
11 months ago by swbarnes2 15k
0
votes
0
replies
1.5k
views
Comment: Comment: RNA-seq to look at the Effect of Viral Infection
11 months ago by swbarnes2 15k
0
votes
1
reply
1.5k
views
Comment: Comment: How to include the lane index in STARsolo count matrix barcodes.tsv?
12 months ago by swbarnes2 15k
1
vote
0
replies
1.5k
views
Answer: Answer: How to include the lane index in STARsolo count matrix barcodes.tsv?
12 months ago by swbarnes2 15k
0
votes
1
reply
2.5k
views
Comment: Comment: bcl2fastq
12 months ago by swbarnes2 15k
1
vote
2
replies
2.5k
views
Answer: Answer: bcl2fastq
12 months ago by swbarnes2 15k
0
votes
0
replies
1.1k
views
Answer: Answer: Contrasts for comparing condition within tissue
12 months ago by swbarnes2 15k
0
votes
0
replies
1.7k
views
Comment: Comment: Optical Duplicates
12 months ago by swbarnes2 15k
1
vote
1
reply
1.7k
views
Comment: Comment: Optical Duplicates
12 months ago by swbarnes2 15k
0
votes
0
replies
1.2k
views
Answer: Answer: Perform DESeq2 with One factor with three levels vs Two factor with two levels
12 months ago by swbarnes2 15k
0
votes
1
reply
3.1k
views
Comment: Comment: Question about edgeR p-values/FDR values
12 months ago by swbarnes2 15k
1
vote
0
replies
1.2k
views
Comment: Comment: alignment to human transcriptome with Bowtie2
12 months ago by swbarnes2 15k
1
vote
1
reply
1.2k
views
Answer: Answer: alignment to human transcriptome with Bowtie2
13 months ago by swbarnes2 15k
1
vote
0
replies
1.5k
views
Comment: Comment: Paired-end sequencing with inconsistent quality/number of reads
13 months ago by swbarnes2 15k
0
votes
1
reply
1.3k
views
Comment: Comment: Explanation of DESeq factor leveling
13 months ago by swbarnes2 15k
0
votes
1
reply
4.1k
views
Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
13 months ago by swbarnes2 15k
1
vote
1
reply
4.1k
views
Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
13 months ago by swbarnes2 15k
0
votes
2
replies
2.0k
views
Comment: Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
14 months ago by swbarnes2 15k
0
votes
1
reply
2.0k
views
Comment: Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
14 months ago by swbarnes2 15k
1
vote
0
replies
894
views
Answer: Answer: Comparing exposure time points of RNA-seq data of samples exposed to various tre
14 months ago by swbarnes2 15k
1
vote
1
reply
1.2k
views
Comment: Comment: RNASeq Analysis: data from different library
14 months ago by swbarnes2 15k
0
votes
1
reply
2.0k
views
Comment: Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
14 months ago by swbarnes2 15k
2
votes
1
reply
1.0k
views
Answer: Answer: Variant callers for single cell WGS
14 months ago by swbarnes2 15k
0
votes
1
reply
2.0k
views
Answer: Answer: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
14 months ago by swbarnes2 15k
0
votes
0
replies
1.9k
views
Comment: Comment: Chromium 5’ Next GEM single cell STARsolo
14 months ago by swbarnes2 15k
0
votes
2
replies
1.9k
views
Answer: Answer: Chromium 5’ Next GEM single cell STARsolo
14 months ago by swbarnes2 15k
0
votes
0
replies
1.3k
views
Comment: Comment: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
14 months ago by swbarnes2 15k
0
votes
1
reply
1.1k
views
Answer: Answer: DEseq2 with different designs matrix
14 months ago by swbarnes2 15k
2
votes
0
replies
843
views
Answer: Answer: DEseq2 interactions
15 months ago by swbarnes2 15k
2
votes
0
replies
2.0k
views
Answer: Answer: are illumina fastq files typically split by lane?
15 months ago by swbarnes2 15k
1
vote
1
reply
852
views
Answer: Answer: Time-series statistics for a small amount of genes
15 months ago by swbarnes2 15k
0
votes
1
reply
1.1k
views
Comment: Comment: flipped BAM files in IGV after STAR aligner
15 months ago by swbarnes2 15k
0
votes
0
replies
2.3k
views
Comment: Comment: Aligning reads from mouse samples that express 1 human gene
15 months ago by swbarnes2 15k
0
votes
0
replies
1.5k
views
Comment: Comment: Batch correction in RNAseq
15 months ago by swbarnes2 15k
0
votes
0
replies
2.6k
views
Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
15 months ago by swbarnes2 15k
0
votes
0
replies
1.4k
views
Comment: Comment: Merging two sequencing datasets
15 months ago by swbarnes2 15k
0
votes
0
replies
1.4k
views
Answer: Answer: Merging two sequencing datasets
16 months ago by swbarnes2 15k
1
vote
0
replies
1.3k
views
Comment: Comment: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
16 months ago by swbarnes2 15k
2
votes
1
reply
1.3k
views
Answer: Answer: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
16 months ago by swbarnes2 15k
0
votes
0
replies
1.5k
views
Comment: Comment: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
16 months ago by swbarnes2 15k
0
votes
1
reply
1.5k
views
Answer: Answer: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
16 months ago by swbarnes2 15k
0
votes
1
reply
2.2k
views
Comment: Comment: bam is in a format that cannot be usefully indexed
16 months ago by swbarnes2 15k
1
vote
0
replies
903
views
Answer: Answer: DESeq2 sizeFactor for Bacterial RNASeq
16 months ago by swbarnes2 15k
0
votes
0
replies
2.3k
views
Answer: Answer: Bacterial RNASeq doubts
16 months ago by swbarnes2 15k
2,124 results • Page 2 of 43
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6