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Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
3 months ago by swbarnes2 14k
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382
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Answer: Answer: Single cell rna sequencing analysis using R help
3 months ago by swbarnes2 14k
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511
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Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
3 months ago by swbarnes2 14k
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284
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Answer: Answer: biological replicate in STAR command
3 months ago by swbarnes2 14k
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465
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Answer: Answer: PCA plot analysis
3 months ago by swbarnes2 14k
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501
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Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
3 months ago by swbarnes2 14k
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366
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Comment: Comment: Getting less DE genes when incorporating all samples
3 months ago by swbarnes2 14k
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0
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508
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Comment: Comment: Count table statistical analysis
3 months ago by swbarnes2 14k
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682
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
4 months ago by swbarnes2 14k
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0
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682
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Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
4 months ago by swbarnes2 14k
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0
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672
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Comment: Comment: Three fastq files
4 months ago by swbarnes2 14k
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542
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Comment: Comment: Differential gene expression design using Deseq2
4 months ago by swbarnes2 14k
2
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1
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1.3k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
4 months ago by swbarnes2 14k
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1.3k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
4 months ago by swbarnes2 14k
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0
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634
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Answer: Answer: Help interpreting Samtools Flagstat results
4 months ago by swbarnes2 14k
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530
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
4 months ago by swbarnes2 14k
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530
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
4 months ago by swbarnes2 14k
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765
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Comment: Comment: No tumour cells in clustering of tumor sample?!
5 months ago by swbarnes2 14k
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867
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Comment: Comment: DESeq2 heatmap with low baseMean values
5 months ago by swbarnes2 14k
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867
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Comment: Comment: DESeq2 heatmap with low baseMean values
5 months ago by swbarnes2 14k
2
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0
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394
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Answer: Answer: Interpretation of output from MiXCR TCR sequencing
5 months ago by swbarnes2 14k
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392
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Answer: Answer: Strand information from reverse stranded RNA-seq
5 months ago by swbarnes2 14k
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0
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677
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Comment: Comment: bcl2fastq problems with the yield
5 months ago by swbarnes2 14k
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677
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Answer: Answer: bcl2fastq problems with the yield
5 months ago by swbarnes2 14k
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742
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Comment: Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
6 months ago by swbarnes2 14k
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0
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531
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Answer: Answer: Are 10x cellranger-arc ATAC bam files deduplicated?
6 months ago by swbarnes2 14k
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0
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426
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Answer: Answer: Bulk and Single Cell RNA-seq online course
6 months ago by swbarnes2 14k
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0
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925
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Answer: Answer: STAR ALIGNMENT
6 months ago by swbarnes2 14k
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925
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Comment: Comment: STAR ALIGNMENT
6 months ago by swbarnes2 14k
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1
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1.1k
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Answer: Answer: Handling multiple fastq files per sample, per lane, per read out of the Cellrang
7 months ago by swbarnes2 14k
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1
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960
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
7 months ago by swbarnes2 14k
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0
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831
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Answer: Answer: RNAseq how to map Mouse+Virus Genome with STAR
7 months ago by swbarnes2 14k
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0
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1.1k
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Comment: Comment: deal with PCA and my samples
7 months ago by swbarnes2 14k
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792
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Answer: Answer: batch correction in DESeq2
7 months ago by swbarnes2 14k
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1
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1.5k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
7 months ago by swbarnes2 14k
1
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1
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1.5k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
7 months ago by swbarnes2 14k
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1
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648
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
7 months ago by swbarnes2 14k
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0
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495
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Answer: Answer: Help with DESeq2 Analysis of Multiple Conditions
8 months ago by swbarnes2 14k
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0
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816
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Comment: Comment: DESeq2: DESeqDataSetFromMatrix Error
8 months ago by swbarnes2 14k
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1
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816
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Answer: Answer: DESeq2: DESeqDataSetFromMatrix Error
8 months ago by swbarnes2 14k
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0
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576
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Comment: Comment: Use SAM files in ref_map.pl
8 months ago by swbarnes2 14k
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0
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680
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Comment: Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
8 months ago by swbarnes2 14k
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953
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Answer: Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
8 months ago by swbarnes2 14k
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1
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812
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Answer: Answer: DESeq2 analysis using two featureCounts generated from different studies
8 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Adding a control sample to bulk RNA-seq
8 months ago by swbarnes2 14k
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0
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777
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Comment: Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
8 months ago by swbarnes2 14k
5
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1
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1.1k
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Answer: Answer: Adding a control sample to bulk RNA-seq
8 months ago by swbarnes2 14k
1
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0
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628
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
8 months ago by swbarnes2 14k
2
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0
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583
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Answer: Answer: DESeq2 design comparing changes through 2 timepoints of 2 different treatments.
9 months ago by swbarnes2 14k
0
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0
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544
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Answer: Answer: sequencing machines output files layout
9 months ago by swbarnes2 14k
2,020 results • Page 2 of 41
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