Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
2
replies
1.5k
views
Comment: C: bowtie2 giving 0% alignment rato across all samples
5.1 years ago by swbarnes2 15k
1
vote
0
replies
1.6k
views
Comment: C: How to have the count of reads mapping each transcript of a fasta file ?
5.1 years ago by swbarnes2 15k
0
votes
1
reply
1.6k
views
Comment: C: How to have the count of reads mapping each transcript of a fasta file ?
5.1 years ago by swbarnes2 15k
0
votes
0
replies
1.6k
views
Comment: C: correct header with samtools mpileup
5.1 years ago by swbarnes2 15k
1
vote
0
replies
940
views
Answer: A: Possibility of mapping opposite strand
5.1 years ago by swbarnes2 15k
1
vote
0
replies
2.7k
views
Answer: A: cellranger: min gene count and UMI/cell filter?
5.1 years ago by swbarnes2 15k
0
votes
0
replies
3.2k
views
Comment: C: Interpretation of two PCA plots
5.1 years ago by swbarnes2 15k
0
votes
2
replies
3.2k
views
Answer: A: Interpretation of two PCA plots
5.1 years ago by swbarnes2 15k
1
vote
0
replies
1.9k
views
Answer: A: Trimmomatic trimming 3' bases
5.1 years ago by swbarnes2 15k
0
votes
0
replies
2.0k
views
Comment: A: extracting count matrix from default cell ranger files
5.1 years ago by swbarnes2 15k
0
votes
0
replies
1.9k
views
Answer: A: Deseq2 Biological replicates
5.1 years ago by swbarnes2 15k
0
votes
0
replies
6.2k
views
Comment: C: bowtie2 using loop on bash with paired-ended reads
5.1 years ago by swbarnes2 15k
0
votes
1
reply
1.8k
views
Answer: A: Few genes had padj < 0.1
5.1 years ago by swbarnes2 15k
1
vote
1
reply
6.2k
views
Answer: A: bowtie2 using loop on bash with paired-ended reads
5.1 years ago by swbarnes2 15k
0
votes
1
reply
849
views
Comment: C: Need Help designing a workflow
5.1 years ago by swbarnes2 15k
0
votes
0
replies
3.1k
views
Comment: A: How to rename headers of sequences in large fasta file
5.1 years ago by swbarnes2 15k
0
votes
2
replies
3.1k
views
Comment: C: Procedure to run OptiType on a BAM File
5.1 years ago by swbarnes2 15k
0
votes
1
reply
1.2k
views
Comment: C: BCFTools - empty output
5.1 years ago by swbarnes2 15k
0
votes
1
reply
3.1k
views
Comment: C: Procedure to run OptiType on a BAM File
5.1 years ago by swbarnes2 15k
1
vote
1
reply
3.6k
views
Comment: C: how to export scanpy data to loupe?
5.1 years ago by swbarnes2 15k
0
votes
1
reply
3.6k
views
Answer: A: how to export scanpy data to loupe?
5.1 years ago by swbarnes2 15k
0
votes
1
reply
1.5k
views
Answer: A: Determine Reading Frame from Exon Genomic Positions (rMATS)
5.1 years ago by swbarnes2 15k
0
votes
1
reply
1.3k
views
Comment: C: Learning how to use Samtools
5.1 years ago by swbarnes2 15k
0
votes
1
reply
1.3k
views
Answer: A: Deseq2 more than two condition
5.1 years ago by swbarnes2 15k
2
votes
0
replies
3.1k
views
Answer: A: UMI and the reason of high duplicate rate
5.1 years ago by swbarnes2 15k
0
votes
1
reply
1.0k
views
Answer: A: retain UMIs when converting bam to vcf file
5.1 years ago by swbarnes2 15k
0
votes
1
reply
8.8k
views
Answer: A: How to assign read groups to bam files?
5.1 years ago by swbarnes2 15k
0
votes
0
replies
8.8k
views
Comment: C: How to assign read groups to bam files?
5.1 years ago by swbarnes2 15k
1
vote
1
reply
1.4k
views
Answer: A: HTG EdgeSeq miRNA on plasma samples: DESeq2 normalization concerns
5.1 years ago by swbarnes2 15k
0
votes
1
reply
2.9k
views
Comment: C: featureCount with high multimapping fragments
5.1 years ago by swbarnes2 15k
0
votes
1
reply
1.2k
views
Comment: C: Different assembler and difference in genomic variants. Is it possible?
5.1 years ago by swbarnes2 15k
0
votes
1
reply
2.9k
views
Answer: A: featureCount with high multimapping fragments
5.1 years ago by swbarnes2 15k
0
votes
2
replies
2.1k
views
Comment: C: Runing a mix of samples using Hashtags in different 10x chip lanes
5.1 years ago by swbarnes2 15k
1
vote
1
reply
2.7k
views
Comment: C: Removing variation identified by principal components in RNA-seq
5.1 years ago by swbarnes2 15k
3
votes
1
reply
2.7k
views
Answer: A: Removing variation identified by principal components in RNA-seq
5.1 years ago by swbarnes2 15k
2
votes
0
replies
1.5k
views
Answer: A: Is mixing samples (tissues from several mice in one replicate) OK for RNA-seq? a
5.1 years ago by swbarnes2 15k
0
votes
1
reply
1.5k
views
Comment: C: Differencial expression analysis between groups determined by two variables
5.1 years ago by swbarnes2 15k
2
votes
1
reply
2.4k
views
Answer: A: Does it matters whether we give FASTA or FASTq files to STAR
5.1 years ago by swbarnes2 15k
3
votes
1
reply
2.6k
views
Answer: A: bbduk truncated fastq file according to FastQC - help?
5.1 years ago by swbarnes2 15k
0
votes
0
replies
2.6k
views
Comment: C: featureCounts returning counts of 0 for all gene_id
5.1 years ago by swbarnes2 15k
1
vote
0
replies
3.0k
views
Answer: A: DESeq2 design suggestions: one combined condition, or two separate conditions?
5.1 years ago by swbarnes2 15k
2
votes
0
replies
1.1k
views
Answer: A: Whole Genome Seq Analysis Software for Identifying Specific Gene Variants
5.1 years ago by swbarnes2 15k
2
votes
1
reply
12k
views
Answer: A: Using featureCounts on paired-end reads aligned with HISAT2 resulting in 0 assig
5.1 years ago by swbarnes2 15k
0
votes
1
reply
2.8k
views
Comment: C: PCA plot, less points than samples
5.2 years ago by swbarnes2 15k
2
votes
1
reply
2.8k
views
Comment: C: PCA plot, less points than samples
5.2 years ago by swbarnes2 15k
0
votes
1
reply
6.6k
views
Answer: A: BWA-MEM - Improperly Paired Reads
5.2 years ago by swbarnes2 15k
0
votes
0
replies
1.7k
views
Answer: A: Failed to convert bamToBed, pair-end
5.2 years ago by swbarnes2 15k
0
votes
1
reply
2.0k
views
Answer: A: How does featurecounts deal with the output from Bowtie?
5.2 years ago by swbarnes2 15k
2
votes
0
replies
1.2k
views
Answer: A: Two different library preps
5.2 years ago by swbarnes2 15k
1
vote
1
reply
1.9k
views
Answer: A: RNAseq fastqc report some failures, how to solve it?
5.2 years ago by swbarnes2 15k
2,124 results • Page 20 of 43
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6