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Answer: A: Remove ensembl identifiers from Seurat
5.4 years ago by swbarnes2 15k
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1.6k
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Answer: A: How to do a DGE analysis of a list of 1000 genes of interest?
5.4 years ago by swbarnes2 15k
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3.3k
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Comment: C: How to make a gene counts matrix ? (input edgeR/DESeq2)
5.4 years ago by swbarnes2 15k
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2.8k
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Comment: C: Can't merge gene names with accession numbers
5.4 years ago by swbarnes2 15k
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2.8k
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Answer: A: Can't merge gene names with accession numbers
5.4 years ago by swbarnes2 15k
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5.7k
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Comment: C: Alignments not labelled as proper pair on bwa mem
5.5 years ago by swbarnes2 15k
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2.0k
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Answer: A: BWA does contig orientation matter?
5.5 years ago by swbarnes2 15k
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2.1k
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Answer: A: DESeq2 - desing, multiple groups - treatment in different time
5.5 years ago by swbarnes2 15k
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1.9k
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Answer: A: How to pull pairwise comparison results after running DESeq() with more than two
5.5 years ago by swbarnes2 15k
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5.4k
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Comment: C: Too many unmapped reads - STAR alignment
5.5 years ago by swbarnes2 15k
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7.7k
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Answer: A: Storing a matrix.mtx in a gene expression matrix csv/ txt format
5.5 years ago by swbarnes2 15k
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2.0k
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Answer: A: Differential gene expression analysis
5.5 years ago by swbarnes2 15k
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1.0k
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Answer: A: Proper design in deseq2
5.5 years ago by swbarnes2 15k
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1
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4.3k
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Comment: C: Downsampling paired-end FASTQ files with a precise number of bases (not reads) -
5.5 years ago by swbarnes2 15k
1
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0
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34k
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Answer: A: DeSeq2 error: Every gene contains at least one zero, cannot compute log geometri
5.5 years ago by swbarnes2 15k
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0
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670
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Answer: A: Access sequence data of clustered scRNA analysis
5.5 years ago by swbarnes2 15k
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1
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5.2k
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Answer: A: Fraction reads in cells CELLRANGER
5.5 years ago by swbarnes2 15k
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1
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7.0k
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Answer: A: can I map multiple (>2) fastq reads against and assembly using bwa?
5.5 years ago by swbarnes2 15k
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0
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2.9k
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Answer: A: How to filter out mouse cells to from a mixture library (mouse and human cells)
5.5 years ago by swbarnes2 15k
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1
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2.5k
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Comment: C: Removing a subset of fasta reads from a huge fastq file
5.5 years ago by swbarnes2 15k
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1
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2.3k
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Answer: A: STAR Mapping muliple files
5.5 years ago by swbarnes2 15k
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1
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1.1k
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Comment: C: Difference in differential gene expression
5.5 years ago by swbarnes2 15k
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1.6k
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Comment: C: Detecting potentially unannotated genes from RNA-seq alignments?
5.5 years ago by swbarnes2 15k
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5.7k
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Comment: C: Counts table as edgeR input for differential gene expression
5.5 years ago by swbarnes2 15k
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0
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3.0k
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Answer: A: RNAseq: should I trim both 3' and 5'?
5.5 years ago by swbarnes2 15k
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2
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5.7k
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Answer: A: Counts table as edgeR input for differential gene expression
5.5 years ago by swbarnes2 15k
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1
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1.1k
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Comment: C: IGV showing RNA-Seq coverage of only a single exon of a gene
5.5 years ago by swbarnes2 15k
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0
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1.5k
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Answer: A: Genome with many duplicated genes: allow multimapping in featurecounts?
5.5 years ago by swbarnes2 15k
0
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1
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17k
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Comment: C: Deseq error : ncol(countData) == nrow(colData) is not TRUE
5.6 years ago by swbarnes2 15k
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0
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4.0k
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Comment: C: windows bioinformatics programs
5.6 years ago by swbarnes2 15k
1
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0
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1.9k
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Comment: C: Doubt regarding dna sequence length
5.6 years ago by swbarnes2 15k
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1
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2.0k
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Answer: A: Treated technical replicates as biological replicates by mistake
5.6 years ago by swbarnes2 15k
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2.9k
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Comment: C: having trouble running Salmon in anaconda prompt
5.6 years ago by swbarnes2 15k
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1
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10k
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Comment: C: Cellranger aggr versus Seurat
5.6 years ago by swbarnes2 15k
2
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3
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10k
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Cellranger aggr versus Seurat
10xGenomics 10XGenomics Seurat single cell
updated 5.6 years ago by 13k • written 5.6 years ago by 15k
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2.6k
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Comment: C: Removing strandedness information for analysis RSEM/STAR/
5.6 years ago by swbarnes2 15k
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1
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2.6k
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Comment: C: Removing strandedness information for analysis RSEM/STAR/
5.6 years ago by swbarnes2 15k
2
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3.5k
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Answer: A: Is trimming always better?
5.6 years ago by swbarnes2 15k
1
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1
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1.2k
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Answer: A: STAR multiple mapping
5.6 years ago by swbarnes2 15k
1
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1
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3.1k
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Answer: A: Cellranger Reanalyze NO barcode rank plot in web_summary.html
5.6 years ago by swbarnes2 15k
1
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1
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3.1k
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Comment: C: Cellranger Reanalyze NO barcode rank plot in web_summary.html
5.6 years ago by swbarnes2 15k
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0
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1.2k
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Comment: C: Attaining subset of reads from fastq file that are mapped in alignment
5.6 years ago by swbarnes2 15k
1
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0
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1.5k
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Answer: A: How to recognize single-end fastq files
5.6 years ago by swbarnes2 15k
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0
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2.3k
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Comment: C: Bowtie2: Single End Reads Reporting 100% or 0% Alignment
5.6 years ago by swbarnes2 15k
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1
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2.3k
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Comment: C: Does my .sam file look ok? How to convert it?
5.6 years ago by swbarnes2 15k
2
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1
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2.3k
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Answer: A: Does my .sam file look ok? How to convert it?
5.6 years ago by swbarnes2 15k
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1
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1.4k
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Comment: C: Apply conditions to forward/reverse strands on BAM file (RNA-Seq)
5.6 years ago by swbarnes2 15k
1
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1
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5.4k
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Answer: A: Drop-seq cell barcode whitelist
5.6 years ago by swbarnes2 15k
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0
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2.1k
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Answer: A: Whole human genome sequence of COVID19 patient
5.6 years ago by swbarnes2 15k
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0
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2.8k
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Answer: A: no reads pseudoalign with stranded option in Kallisto
5.6 years ago by swbarnes2 15k
2,124 results • Page 24 of 43
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