Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.7k
views
Answer: Answer: RNA_seq
20 months ago by swbarnes2 15k
1
vote
0
replies
1.3k
views
Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
20 months ago by swbarnes2 15k
2
votes
0
replies
1.2k
views
Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
20 months ago by swbarnes2 15k
0
votes
1
reply
1.9k
views
Answer: Answer: RNA Seq Sample Outlier
20 months ago by swbarnes2 15k
1
vote
1
reply
1.6k
views
Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
20 months ago by swbarnes2 15k
1
vote
1
reply
2.7k
views
Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
20 months ago by swbarnes2 15k
2
votes
1
reply
1.3k
views
Answer: Answer: Single cell rna sequencing analysis using R help
20 months ago by swbarnes2 15k
3
votes
0
replies
1.3k
views
Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
20 months ago by swbarnes2 15k
1
vote
0
replies
649
views
Answer: Answer: biological replicate in STAR command
21 months ago by swbarnes2 15k
1
vote
0
replies
1.3k
views
Answer: Answer: PCA plot analysis
21 months ago by swbarnes2 15k
0
votes
1
reply
1.4k
views
Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
21 months ago by swbarnes2 15k
2
votes
0
replies
991
views
Comment: Comment: Getting less DE genes when incorporating all samples
21 months ago by swbarnes2 15k
1
vote
0
replies
1.2k
views
Comment: Comment: Count table statistical analysis
21 months ago by swbarnes2 15k
1
vote
1
reply
1.8k
views
Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
21 months ago by swbarnes2 15k
0
votes
0
replies
1.8k
views
Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
21 months ago by swbarnes2 15k
1
vote
0
replies
1.9k
views
Comment: Comment: Three fastq files
21 months ago by swbarnes2 15k
0
votes
0
replies
1.2k
views
Comment: Comment: Differential gene expression design using Deseq2
21 months ago by swbarnes2 15k
2
votes
1
reply
3.1k
views
Comment: Comment: Expression analysis of LncRNA from RNA-seq data
22 months ago by swbarnes2 15k
1
vote
1
reply
3.1k
views
Comment: Comment: Expression analysis of LncRNA from RNA-seq data
22 months ago by swbarnes2 15k
0
votes
0
replies
1.5k
views
Answer: Answer: Help interpreting Samtools Flagstat results
22 months ago by swbarnes2 15k
0
votes
0
replies
1.2k
views
Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
22 months ago by swbarnes2 15k
0
votes
1
reply
1.2k
views
Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
22 months ago by swbarnes2 15k
0
votes
0
replies
1.6k
views
Comment: Comment: No tumour cells in clustering of tumor sample?!
22 months ago by swbarnes2 15k
0
votes
0
replies
2.1k
views
Comment: Comment: DESeq2 heatmap with low baseMean values
22 months ago by swbarnes2 15k
0
votes
1
reply
2.1k
views
Comment: Comment: DESeq2 heatmap with low baseMean values
22 months ago by swbarnes2 15k
2
votes
0
replies
955
views
Answer: Answer: Interpretation of output from MiXCR TCR sequencing
22 months ago by swbarnes2 15k
0
votes
0
replies
856
views
Answer: Answer: Strand information from reverse stranded RNA-seq
23 months ago by swbarnes2 15k
0
votes
0
replies
1.4k
views
Comment: Comment: bcl2fastq problems with the yield
23 months ago by swbarnes2 15k
0
votes
1
reply
1.4k
views
Answer: Answer: bcl2fastq problems with the yield
23 months ago by swbarnes2 15k
1
vote
1
reply
1.8k
views
Comment: Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
23 months ago by swbarnes2 15k
1
vote
0
replies
1.3k
views
Answer: Answer: Are 10x cellranger-arc ATAC bam files deduplicated?
24 months ago by swbarnes2 15k
1
vote
0
replies
822
views
Answer: Answer: Bulk and Single Cell RNA-seq online course
24 months ago by swbarnes2 15k
0
votes
0
replies
2.3k
views
Answer: Answer: STAR ALIGNMENT
2.0 years ago by swbarnes2 15k
0
votes
0
replies
2.3k
views
Comment: Comment: STAR ALIGNMENT
2.0 years ago by swbarnes2 15k
0
votes
1
reply
2.7k
views
Answer: Answer: Handling multiple fastq files per sample, per lane, per read out of the Cellrang
2.0 years ago by swbarnes2 15k
0
votes
1
reply
1.9k
views
Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
2.0 years ago by swbarnes2 15k
0
votes
0
replies
1.5k
views
Answer: Answer: RNAseq how to map Mouse+Virus Genome with STAR
2.0 years ago by swbarnes2 15k
1
vote
0
replies
2.7k
views
Comment: Comment: deal with PCA and my samples
2.1 years ago by swbarnes2 15k
2
votes
0
replies
1.6k
views
Answer: Answer: batch correction in DESeq2
2.1 years ago by swbarnes2 15k
0
votes
1
reply
4.2k
views
Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
2.1 years ago by swbarnes2 15k
1
vote
1
reply
4.2k
views
Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
2.1 years ago by swbarnes2 15k
0
votes
1
reply
1.4k
views
Comment: Comment: I cannot obtain summary alignment with Bowtie2
2.1 years ago by swbarnes2 15k
0
votes
0
replies
932
views
Answer: Answer: Help with DESeq2 Analysis of Multiple Conditions
2.1 years ago by swbarnes2 15k
0
votes
0
replies
1.8k
views
Comment: Comment: DESeq2: DESeqDataSetFromMatrix Error
2.1 years ago by swbarnes2 15k
0
votes
1
reply
1.8k
views
Answer: Answer: DESeq2: DESeqDataSetFromMatrix Error
2.1 years ago by swbarnes2 15k
0
votes
0
replies
1.0k
views
Comment: Comment: Use SAM files in ref_map.pl
2.1 years ago by swbarnes2 15k
0
votes
0
replies
1.4k
views
Comment: Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
2.1 years ago by swbarnes2 15k
1
vote
1
reply
1.6k
views
Answer: Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
2.2 years ago by swbarnes2 15k
1
vote
1
reply
2.0k
views
Answer: Answer: DESeq2 analysis using two featureCounts generated from different studies
2.2 years ago by swbarnes2 15k
1
vote
1
reply
2.3k
views
Comment: Comment: Adding a control sample to bulk RNA-seq
2.2 years ago by swbarnes2 15k
2,124 results • Page 4 of 43
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6