Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
1
reply
1.4k
views
Answer: Answer: Log fold change from rlog
3.1 years ago by swbarnes2 15k
0
votes
0
replies
2.9k
views
Answer: Answer: Quantseq 3' seq alignment with kallisto
3.1 years ago by swbarnes2 15k
0
votes
1
reply
2.9k
views
Comment: Comment: Quantseq 3' seq alignment with kallisto
3.1 years ago by swbarnes2 15k
0
votes
1
reply
2.9k
views
Comment: Comment: Quantseq 3' seq alignment with kallisto
3.1 years ago by swbarnes2 15k
2
votes
1
reply
1.9k
views
Answer: Answer: Can I perform DE analysis with Seurat if I only have one sample per condition?
3.1 years ago by swbarnes2 15k
1
vote
0
replies
1.6k
views
Comment: Comment: Aligner logic
3.1 years ago by swbarnes2 15k
1
vote
1
reply
1.6k
views
Answer: Answer: Aligner logic
3.1 years ago by swbarnes2 15k
0
votes
0
replies
2.5k
views
Answer: Answer: convert a list of plotly plots to an HTML output
3.1 years ago by swbarnes2 15k
1
vote
1
reply
3.4k
views
Comment: Comment: bcl2fastq dumps most of the reads as undetermined
3.1 years ago by swbarnes2 15k
0
votes
1
reply
3.9k
views
Comment: Comment: What sequencing/alignment artifact is this?
3.1 years ago by swbarnes2 15k
0
votes
0
replies
3.9k
views
Comment: Comment: What sequencing/alignment artifact is this?
3.1 years ago by swbarnes2 15k
0
votes
1
reply
1.4k
views
Comment: Comment: Why do I see sudden rise in TOTAL COUNT of my bam. I dont think it is duplicatio
3.1 years ago by swbarnes2 15k
0
votes
0
replies
2.2k
views
Comment: Comment: Why I get error while performing DeSeq2 ?
3.1 years ago by swbarnes2 15k
0
votes
0
replies
2.2k
views
Comment: Comment: Why I get error while performing DeSeq2 ?
3.1 years ago by swbarnes2 15k
0
votes
0
replies
3.4k
views
Comment: Comment: Demultiplex fastq files
3.1 years ago by swbarnes2 15k
1
vote
1
reply
1.2k
views
Answer: Answer: Decrease the low counts
3.1 years ago by swbarnes2 15k
0
votes
0
replies
2.0k
views
Comment: Comment: FastQ: quality string length is not equal to sequence length
3.2 years ago by swbarnes2 15k
1
vote
0
replies
1.1k
views
Answer: Answer: Generating DE genes of a time series
3.2 years ago by swbarnes2 15k
0
votes
1
reply
3.4k
views
Comment: Comment: mouse+human cells in 10x scRNA-seq
3.2 years ago by swbarnes2 15k
0
votes
1
reply
3.5k
views
Comment: Comment: From fastq files to fasta
3.2 years ago by swbarnes2 15k
0
votes
0
replies
6.2k
views
Answer: Answer: Multiple conditions DESeq2
3.2 years ago by swbarnes2 15k
1
vote
1
reply
920
views
Answer: Answer: Forward Strand Or Reverse Strand alignment
3.2 years ago by swbarnes2 15k
0
votes
0
replies
1.2k
views
Comment: Comment: Confused about which comparison to give a more accurate answer in RNA seq experi
3.2 years ago by swbarnes2 15k
1
vote
1
reply
2.4k
views
Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
3.2 years ago by swbarnes2 15k
0
votes
0
replies
1.3k
views
Answer: Answer: RNA Seq - Combining & Normalization of 3-library samples from two different sequ
3.2 years ago by swbarnes2 15k
2
votes
1
reply
1.2k
views
Answer: Answer: Confused about which comparison to give a more accurate answer in RNA seq experi
3.2 years ago by swbarnes2 15k
0
votes
1
reply
1.6k
views
Comment: Comment: Colors to Plotting PCA (2D) by R
3.2 years ago by swbarnes2 15k
0
votes
0
replies
1.4k
views
Comment: Comment: Identifying adapter sequence to trim for Illumina IIx data
3.2 years ago by swbarnes2 15k
0
votes
0
replies
997
views
Comment: Comment: Alternate DESeq2 designs to model donor variance
3.2 years ago by swbarnes2 15k
0
votes
0
replies
1.7k
views
Comment: Comment: How to extract the results table for specific samples names after normalization
3.2 years ago by swbarnes2 15k
0
votes
2
replies
997
views
Alternate DESeq2 designs to model donor variance
DESeq2 PCA
3.2 years ago by swbarnes2 15k
0
votes
0
replies
2.1k
views
Comment: Comment: How DESeq2 formula correction works?
3.2 years ago by swbarnes2 15k
1
vote
1
reply
2.1k
views
Comment: Comment: How DESeq2 formula correction works?
3.2 years ago by swbarnes2 15k
1
vote
1
reply
2.1k
views
Answer: Answer: How DESeq2 formula correction works?
3.2 years ago by swbarnes2 15k
0
votes
1
reply
3.3k
views
Answer: Answer: paired-end reads, idxstats, and samtools and grep
3.2 years ago by swbarnes2 15k
0
votes
0
replies
2.7k
views
Comment: Comment: Converting BAM to FASTQ...to new reference genome
3.2 years ago by swbarnes2 15k
0
votes
0
replies
2.7k
views
Comment: Comment: Converting BAM to FASTQ...to new reference genome
3.2 years ago by swbarnes2 15k
0
votes
1
reply
3.0k
views
Comment: Comment: Count specific sequences in a .fasta file
3.2 years ago by swbarnes2 15k
0
votes
1
reply
2.7k
views
Comment: Comment: Converting BAM to FASTQ...to new reference genome
3.2 years ago by swbarnes2 15k
0
votes
1
reply
1.7k
views
Answer: Answer: STAR aligned my .fastq reads to the whole genome as opposed to only to the codin
3.2 years ago by swbarnes2 15k
0
votes
0
replies
865
views
Answer: Answer: How do I filter out reads where Read 2 doesn't map to the end of a fasta sequenc
3.2 years ago by swbarnes2 15k
0
votes
1
reply
1.7k
views
Comment: Comment: Retaining parts of the header file in multiple fasta files.
3.2 years ago by swbarnes2 15k
1
vote
1
reply
1.3k
views
Answer: Answer: mapping paired end data
3.3 years ago by swbarnes2 15k
1
vote
0
replies
794
views
Answer: Answer: WES Wrong Index Sequencing
3.3 years ago by swbarnes2 15k
0
votes
0
replies
5.4k
views
Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
3.3 years ago by swbarnes2 15k
0
votes
1
reply
1.6k
views
Answer: Answer: Time course RNA seq with DESEq2
3.3 years ago by swbarnes2 15k
0
votes
1
reply
2.1k
views
Answer: Answer: Count expression of 10x scRNA-seq after UMI extraction
3.3 years ago by swbarnes2 15k
0
votes
0
replies
1.6k
views
Comment: Comment: Convert fasta to Fastq/bam
3.3 years ago by swbarnes2 15k
0
votes
1
reply
5.4k
views
Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
3.3 years ago by swbarnes2 15k
1
vote
0
replies
1.4k
views
Answer: Answer: Does comparison between two groups still make sense if PCA plot suggest no diffe
3.3 years ago by swbarnes2 15k
2,124 results • Page 8 of 43
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6