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2
votes
0
replies
376
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Answer:
Answer: 'Model matrix not full rank'
15 days ago by
swbarnes2
14k
0
votes
1
reply
294
views
Answer:
Answer: RSEM and STAR
22 days ago by
swbarnes2
14k
0
votes
1
reply
836
views
Answer:
Answer: Parsing error in sam file when converting to bam
4 weeks ago by
swbarnes2
14k
0
votes
0
replies
726
views
Answer:
Answer: Sample-level demultiplex raw FASTQ file
5 weeks ago by
swbarnes2
14k
0
votes
0
replies
1.4k
views
Answer:
Answer: cellranger error fix GTF
5 weeks ago by
swbarnes2
14k
2
votes
2
replies
1.3k
views
Comment:
Comment: undermined fastq and top unknown barcodes
8 weeks ago by
swbarnes2
14k
1
vote
1
reply
1.3k
views
Answer:
Answer: undermined fastq and top unknown barcodes
8 weeks ago by
swbarnes2
14k
0
votes
1
reply
957
views
Answer:
Answer: Counts after using feature counts is low
9 weeks ago by
swbarnes2
14k
0
votes
0
replies
676
views
Comment:
Comment: RNA-seq to look at the Effect of Viral Infection
9 weeks ago by
swbarnes2
14k
0
votes
1
reply
609
views
Comment:
Comment: How to include the lane index in STARsolo count matrix barcodes.tsv?
11 weeks ago by
swbarnes2
14k
1
vote
0
replies
609
views
Answer:
Answer: How to include the lane index in STARsolo count matrix barcodes.tsv?
11 weeks ago by
swbarnes2
14k
0
votes
1
reply
987
views
Comment:
Comment: bcl2fastq
12 weeks ago by
swbarnes2
14k
1
vote
2
replies
987
views
Answer:
Answer: bcl2fastq
12 weeks ago by
swbarnes2
14k
0
votes
0
replies
591
views
Answer:
Answer: Contrasts for comparing condition within tissue
3 months ago by
swbarnes2
14k
0
votes
0
replies
738
views
Comment:
Comment: Optical Duplicates
3 months ago by
swbarnes2
14k
1
vote
1
reply
738
views
Comment:
Comment: Optical Duplicates
3 months ago by
swbarnes2
14k
0
votes
0
replies
675
views
Answer:
Answer: Perform DESeq2 with One factor with three levels vs Two factor with two levels
3 months ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Comment:
Comment: Question about edgeR p-values/FDR values
3 months ago by
swbarnes2
14k
1
vote
0
replies
600
views
Comment:
Comment: alignment to human transcriptome with Bowtie2
3 months ago by
swbarnes2
14k
1
vote
1
reply
600
views
Answer:
Answer: alignment to human transcriptome with Bowtie2
3 months ago by
swbarnes2
14k
1
vote
0
replies
591
views
Comment:
Comment: Paired-end sequencing with inconsistent quality/number of reads
3 months ago by
swbarnes2
14k
0
votes
1
reply
724
views
Comment:
Comment: Explanation of DESeq factor leveling
4 months ago by
swbarnes2
14k
0
votes
1
reply
2.0k
views
Comment:
Comment: DESEQ with time series data on mutant vs. wild-type?
4 months ago by
swbarnes2
14k
1
vote
1
reply
2.0k
views
Comment:
Comment: DESEQ with time series data on mutant vs. wild-type?
4 months ago by
swbarnes2
14k
0
votes
2
replies
1.1k
views
Comment:
Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
4 months ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Comment:
Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
4 months ago by
swbarnes2
14k
1
vote
0
replies
478
views
Answer:
Answer: Comparing exposure time points of RNA-seq data of samples exposed to various tre
4 months ago by
swbarnes2
14k
1
vote
1
reply
612
views
Comment:
Comment: RNASeq Analysis: data from different library
4 months ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Comment:
Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
4 months ago by
swbarnes2
14k
2
votes
1
reply
507
views
Answer:
Answer: Variant callers for single cell WGS
4 months ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Answer:
Answer: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
4 months ago by
swbarnes2
14k
0
votes
0
replies
817
views
Comment:
Comment: Chromium 5’ Next GEM single cell STARsolo
5 months ago by
swbarnes2
14k
0
votes
2
replies
817
views
Answer:
Answer: Chromium 5’ Next GEM single cell STARsolo
5 months ago by
swbarnes2
14k
0
votes
0
replies
512
views
Comment:
Comment: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
5 months ago by
swbarnes2
14k
0
votes
1
reply
591
views
Answer:
Answer: DEseq2 with different designs matrix
5 months ago by
swbarnes2
14k
2
votes
0
replies
460
views
Answer:
Answer: DEseq2 interactions
5 months ago by
swbarnes2
14k
2
votes
0
replies
763
views
Answer:
Answer: are illumina fastq files typically split by lane?
5 months ago by
swbarnes2
14k
1
vote
1
reply
444
views
Answer:
Answer: Time-series statistics for a small amount of genes
5 months ago by
swbarnes2
14k
0
votes
1
reply
524
views
Comment:
Comment: flipped BAM files in IGV after STAR aligner
6 months ago by
swbarnes2
14k
0
votes
0
replies
1.5k
views
Comment:
Comment: Aligning reads from mouse samples that express 1 human gene
6 months ago by
swbarnes2
14k
0
votes
0
replies
777
views
Comment:
Comment: Batch correction in RNAseq
6 months ago by
swbarnes2
14k
0
votes
0
replies
1.5k
views
Answer:
Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
6 months ago by
swbarnes2
14k
0
votes
0
replies
723
views
Comment:
Comment: Merging two sequencing datasets
6 months ago by
swbarnes2
14k
0
votes
0
replies
723
views
Answer:
Answer: Merging two sequencing datasets
6 months ago by
swbarnes2
14k
1
vote
0
replies
563
views
Comment:
Comment: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
6 months ago by
swbarnes2
14k
2
votes
1
reply
563
views
Answer:
Answer: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
6 months ago by
swbarnes2
14k
0
votes
0
replies
726
views
Comment:
Comment: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
6 months ago by
swbarnes2
14k
0
votes
1
reply
726
views
Answer:
Answer: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
6 months ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Comment:
Comment: bam is in a format that cannot be usefully indexed
6 months ago by
swbarnes2
14k
1
vote
0
replies
382
views
Answer:
Answer: DESeq2 sizeFactor for Bacterial RNASeq
7 months ago by
swbarnes2
14k
2,075 results • Page
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