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Answer: Answer: Sequence read length shorter than flow cell specification
4 days ago by swbarnes2 14k
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608
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Comment: Comment: PCA plot (Suggestions Needed)
5 days ago by swbarnes2 14k
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1
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826
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Comment: Comment: Adding CB tag to bam file
5 days ago by swbarnes2 14k
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608
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Comment: Comment: PCA plot (Suggestions Needed)
5 days ago by swbarnes2 14k
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0
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608
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Comment: Comment: PCA plot (Suggestions Needed)
5 days ago by swbarnes2 14k
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1
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474
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Comment: Comment: To get p-values for the TPM
5 days ago by swbarnes2 14k
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321
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Comment: Comment: Should I use unpaired reads from trimmomatic
6 days ago by swbarnes2 14k
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215
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Answer: Answer: from row count to tpm
7 days ago by swbarnes2 14k
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1
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471
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Comment: Comment: Marking duplicates using UMIs
9 days ago by swbarnes2 14k
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484
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Comment: Comment: Free/open source 23andme-like analysis
10 days ago by swbarnes2 14k
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1.3k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
10 days ago by swbarnes2 14k
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1
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826
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Comment: Comment: Adding CB tag to bam file
10 days ago by swbarnes2 14k
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721
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Comment: Comment: RNA seq differential expression analysis
11 days ago by swbarnes2 14k
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1
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826
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Answer: Answer: Adding CB tag to bam file
11 days ago by swbarnes2 14k
2
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1
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651
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
12 days ago by swbarnes2 14k
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0
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574
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
28 days ago by swbarnes2 14k
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1
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574
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
28 days ago by swbarnes2 14k
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408
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
28 days ago by swbarnes2 14k
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422
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
4 weeks ago by swbarnes2 14k
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325
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Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
5 weeks ago by swbarnes2 14k
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0
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298
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Answer: Answer: Detecting viruses in human rna seq data
5 weeks ago by swbarnes2 14k
1
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1
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411
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Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
6 weeks ago by swbarnes2 14k
2
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0
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545
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
6 weeks ago by swbarnes2 14k
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0
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567
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Comment: Comment: RNA_seq
6 weeks ago by swbarnes2 14k
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1
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567
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Answer: Answer: RNA_seq
6 weeks ago by swbarnes2 14k
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0
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363
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
7 weeks ago by swbarnes2 14k
2
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0
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378
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Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
7 weeks ago by swbarnes2 14k
0
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1
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523
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Answer: Answer: RNA Seq Sample Outlier
7 weeks ago by swbarnes2 14k
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1
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397
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Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
7 weeks ago by swbarnes2 14k
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1
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437
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Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
7 weeks ago by swbarnes2 14k
2
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1
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308
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Answer: Answer: Single cell rna sequencing analysis using R help
7 weeks ago by swbarnes2 14k
3
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0
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415
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Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
8 weeks ago by swbarnes2 14k
1
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0
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247
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Answer: Answer: biological replicate in STAR command
8 weeks ago by swbarnes2 14k
1
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0
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382
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Answer: Answer: PCA plot analysis
9 weeks ago by swbarnes2 14k
0
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1
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440
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Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
9 weeks ago by swbarnes2 14k
2
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0
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318
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Comment: Comment: Getting less DE genes when incorporating all samples
10 weeks ago by swbarnes2 14k
1
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0
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449
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Comment: Comment: Count table statistical analysis
10 weeks ago by swbarnes2 14k
1
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1
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557
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
11 weeks ago by swbarnes2 14k
0
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0
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557
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Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
11 weeks ago by swbarnes2 14k
1
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0
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584
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Comment: Comment: Three fastq files
11 weeks ago by swbarnes2 14k
0
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0
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489
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Comment: Comment: Differential gene expression design using Deseq2
12 weeks ago by swbarnes2 14k
0
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
12 weeks ago by swbarnes2 14k
0
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
0
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0
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558
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Answer: Answer: Help interpreting Samtools Flagstat results
3 months ago by swbarnes2 14k
0
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0
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456
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
0
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1
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456
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
0
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0
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676
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Comment: Comment: No tumour cells in clustering of tumor sample?!
3 months ago by swbarnes2 14k
0
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0
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716
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Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
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1
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716
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Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
1
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0
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321
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Answer: Answer: Interpretation of output from MiXCR TCR sequencing
3 months ago by swbarnes2 14k
1,999 results • Page 1 of 40
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