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Answer: Answer: Parsing error in sam file when converting to bam
9 days ago by swbarnes2 14k
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638
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Answer: Answer: Sample-level demultiplex raw FASTQ file
16 days ago by swbarnes2 14k
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1.3k
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Answer: Answer: cellranger error fix GTF
18 days ago by swbarnes2 14k
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1.1k
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Answer: Answer: undermined fastq and top unknown barcodes
5 weeks ago by swbarnes2 14k
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855
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Answer: Answer: Counts after using feature counts is low
6 weeks ago by swbarnes2 14k
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534
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Answer: Answer: How to include the lane index in STARsolo count matrix barcodes.tsv?
8 weeks ago by swbarnes2 14k
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2
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910
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Answer: Answer: bcl2fastq
9 weeks ago by swbarnes2 14k
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562
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Answer: Answer: Contrasts for comparing condition within tissue
10 weeks ago by swbarnes2 14k
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596
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Answer: Answer: Perform DESeq2 with One factor with three levels vs Two factor with two levels
10 weeks ago by swbarnes2 14k
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539
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Answer: Answer: alignment to human transcriptome with Bowtie2
12 weeks ago by swbarnes2 14k
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432
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Answer: Answer: Comparing exposure time points of RNA-seq data of samples exposed to various tre
3 months ago by swbarnes2 14k
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449
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Answer: Answer: Variant callers for single cell WGS
3 months ago by swbarnes2 14k
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967
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Answer: Answer: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
4 months ago by swbarnes2 14k
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2
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749
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Answer: Answer: Chromium 5’ Next GEM single cell STARsolo
4 months ago by swbarnes2 14k
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544
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Answer: Answer: DEseq2 with different designs matrix
4 months ago by swbarnes2 14k
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412
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Answer: Answer: DEseq2 interactions
5 months ago by swbarnes2 14k
2
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684
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Answer: Answer: are illumina fastq files typically split by lane?
5 months ago by swbarnes2 14k
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389
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Answer: Answer: Time-series statistics for a small amount of genes
5 months ago by swbarnes2 14k
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1.4k
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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
5 months ago by swbarnes2 14k
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643
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Answer: Answer: Merging two sequencing datasets
5 months ago by swbarnes2 14k
2
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1
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499
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Answer: Answer: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
5 months ago by swbarnes2 14k
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1
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651
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Answer: Answer: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
6 months ago by swbarnes2 14k
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0
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337
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Answer: Answer: DESeq2 sizeFactor for Bacterial RNASeq
6 months ago by swbarnes2 14k
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1.1k
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Answer: Answer: Bacterial RNASeq doubts
6 months ago by swbarnes2 14k
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1
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685
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Answer: Answer: Not retrieving Mitochondrial Genes in Single Cell analysis
6 months ago by swbarnes2 14k
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776
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Answer: Answer: Two different RNA sequencing sets that have gene names set up differently - how
6 months ago by swbarnes2 14k
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2.3k
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Answer: Answer: Good Bioinformatics Jokes/Puns?
6 months ago by swbarnes2 14k
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1
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445
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Answer: Answer: Batch effects in RNAseq
7 months ago by swbarnes2 14k
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2
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732
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Answer: Answer: RNA Seq Paired End High Duplication Rate
7 months ago by swbarnes2 14k
2
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1
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1.4k
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Answer: Answer: RNA-seq differentially expressed genes (DEGs) with low fold change values
7 months ago by swbarnes2 14k
2
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0
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536
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Answer: Answer: Help me with Heatmap
updated 7 months ago by 12k • written 7 months ago by 14k
6
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1.1k
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Answer: Answer: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
8 months ago by swbarnes2 14k
0
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1
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669
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Answer: Answer: Design for complex RNA-Seq experiment using Deseq2
8 months ago by swbarnes2 14k
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1.2k
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Answer: Answer: In IGV is this a heterogeneous mutation or false call?
8 months ago by swbarnes2 14k
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1
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720
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Answer: Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
8 months ago by swbarnes2 14k
0
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1
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992
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Answer: Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
8 months ago by swbarnes2 14k
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0
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676
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Answer: Answer: Sequence read length shorter than flow cell specification
8 months ago by swbarnes2 14k
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0
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703
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Answer: Answer: from row count to tpm
9 months ago by swbarnes2 14k
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1
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1.9k
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Answer: Answer: Adding CB tag to bam file
9 months ago by swbarnes2 14k
2
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1
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1.4k
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
9 months ago by swbarnes2 14k
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0
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1.3k
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
9 months ago by swbarnes2 14k
0
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0
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509
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Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
10 months ago by swbarnes2 14k
0
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0
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533
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Answer: Answer: Detecting viruses in human rna seq data
10 months ago by swbarnes2 14k
1
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1
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655
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Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
10 months ago by swbarnes2 14k
2
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0
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1.4k
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
10 months ago by swbarnes2 14k
0
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1
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967
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Answer: Answer: RNA_seq
10 months ago by swbarnes2 14k
1
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0
replies
700
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
10 months ago by swbarnes2 14k
2
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0
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639
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Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
10 months ago by swbarnes2 14k
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1.0k
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Answer: Answer: RNA Seq Sample Outlier
10 months ago by swbarnes2 14k
1
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1
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836
views
Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
10 months ago by swbarnes2 14k
1,007 results • Page 1 of 21
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