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comments
1
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609
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Comment:
Comment: PCA plot (Suggestions Needed)
5 days ago by
swbarnes2
14k
0
votes
1
reply
826
views
Comment:
Comment: Adding CB tag to bam file
5 days ago by
swbarnes2
14k
1
vote
0
replies
609
views
Comment:
Comment: PCA plot (Suggestions Needed)
5 days ago by
swbarnes2
14k
0
votes
0
replies
609
views
Comment:
Comment: PCA plot (Suggestions Needed)
5 days ago by
swbarnes2
14k
0
votes
1
reply
474
views
Comment:
Comment: To get p-values for the TPM
5 days ago by
swbarnes2
14k
1
vote
0
replies
321
views
Comment:
Comment: Should I use unpaired reads from trimmomatic
6 days ago by
swbarnes2
14k
0
votes
1
reply
471
views
Comment:
Comment: Marking duplicates using UMIs
9 days ago by
swbarnes2
14k
0
votes
0
replies
484
views
Comment:
Comment: Free/open source 23andme-like analysis
10 days ago by
swbarnes2
14k
0
votes
0
replies
1.3k
views
Comment:
Comment: Cellranger count error: Input FASTQ file ended prematurely
10 days ago by
swbarnes2
14k
0
votes
1
reply
826
views
Comment:
Comment: Adding CB tag to bam file
10 days ago by
swbarnes2
14k
0
votes
0
replies
723
views
Comment:
Comment: RNA seq differential expression analysis
11 days ago by
swbarnes2
14k
0
votes
1
reply
575
views
Comment:
Comment: Removing adapter/primer sequence from reads while keeping flanking regions
28 days ago by
swbarnes2
14k
0
votes
0
replies
409
views
Comment:
Comment: Seeking Help with Unexpected MA Plot Output
28 days ago by
swbarnes2
14k
1
vote
0
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422
views
Comment:
Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
4 weeks ago by
swbarnes2
14k
0
votes
0
replies
567
views
Comment:
Comment: RNA_seq
6 weeks ago by
swbarnes2
14k
2
votes
0
replies
318
views
Comment:
Comment: Getting less DE genes when incorporating all samples
10 weeks ago by
swbarnes2
14k
1
vote
0
replies
449
views
Comment:
Comment: Count table statistical analysis
10 weeks ago by
swbarnes2
14k
1
vote
1
reply
559
views
Comment:
Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
11 weeks ago by
swbarnes2
14k
1
vote
0
replies
584
views
Comment:
Comment: Three fastq files
11 weeks ago by
swbarnes2
14k
0
votes
0
replies
489
views
Comment:
Comment: Differential gene expression design using Deseq2
12 weeks ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Comment:
Comment: Expression analysis of LncRNA from RNA-seq data
12 weeks ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Comment:
Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by
swbarnes2
14k
0
votes
0
replies
456
views
Comment:
Comment: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by
swbarnes2
14k
0
votes
0
replies
679
views
Comment:
Comment: No tumour cells in clustering of tumor sample?!
3 months ago by
swbarnes2
14k
0
votes
0
replies
717
views
Comment:
Comment: DESeq2 heatmap with low baseMean values
3 months ago by
swbarnes2
14k
0
votes
1
reply
717
views
Comment:
Comment: DESeq2 heatmap with low baseMean values
3 months ago by
swbarnes2
14k
0
votes
0
replies
629
views
Comment:
Comment: bcl2fastq problems with the yield
4 months ago by
swbarnes2
14k
1
vote
1
reply
662
views
Comment:
Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
4 months ago by
swbarnes2
14k
0
votes
0
replies
817
views
Comment:
Comment: STAR ALIGNMENT
5 months ago by
swbarnes2
14k
0
votes
1
reply
832
views
Comment:
Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
5 months ago by
swbarnes2
14k
1
vote
0
replies
967
views
Comment:
Comment: deal with PCA and my samples
6 months ago by
swbarnes2
14k
0
votes
1
reply
1.3k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by
swbarnes2
14k
1
vote
1
reply
1.3k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by
swbarnes2
14k
0
votes
1
reply
593
views
Comment:
Comment: I cannot obtain summary alignment with Bowtie2
6 months ago by
swbarnes2
14k
0
votes
0
replies
753
views
Comment:
Comment: DESeq2: DESeqDataSetFromMatrix Error
6 months ago by
swbarnes2
14k
0
votes
0
replies
532
views
Comment:
Comment: Use SAM files in ref_map.pl
6 months ago by
swbarnes2
14k
0
votes
0
replies
619
views
Comment:
Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
6 months ago by
swbarnes2
14k
1
vote
1
reply
1.1k
views
Comment:
Comment: Adding a control sample to bulk RNA-seq
7 months ago by
swbarnes2
14k
0
votes
0
replies
733
views
Comment:
Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
7 months ago by
swbarnes2
14k
1
vote
0
replies
565
views
Comment:
Comment: Batch effect consideration (re-seq the same sample twice)
7 months ago by
swbarnes2
14k
0
votes
1
reply
576
views
Comment:
Comment: htseq-count reports count values for deleted genes
7 months ago by
swbarnes2
14k
0
votes
0
replies
742
views
Comment:
Comment: How to Add Mutations to the sequence
8 months ago by
swbarnes2
14k
0
votes
0
replies
1.3k
views
Comment:
Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
8 months ago by
swbarnes2
14k
2
votes
0
replies
1.2k
views
Comment:
Comment: STAR mapping - regarding output files content
8 months ago by
swbarnes2
14k
0
votes
0
replies
930
views
Comment:
Comment: RSEM uses different gene lengths for each sample.
8 months ago by
swbarnes2
14k
0
votes
0
replies
711
views
Comment:
Comment: Can I extract a complete sequence of gene from mapped reads bam file
9 months ago by
swbarnes2
14k
1
vote
0
replies
1.1k
views
Comment:
Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
9 months ago by
swbarnes2
14k
1
vote
0
replies
1.2k
views
Comment:
Comment: Transcript quantification
10 months ago by
swbarnes2
14k
0
votes
0
replies
1.8k
views
Comment:
Comment: Getting sequences from fastq file using Grep command
10 months ago by
swbarnes2
14k
0
votes
0
replies
1.3k
views
Comment:
Comment: A question about the raw RNA-seq processing workflow
10 months ago by
swbarnes2
14k
1,021 results • Page
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