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2
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2
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1.2k
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Comment: Comment: undermined fastq and top unknown barcodes
6 weeks ago by swbarnes2 14k
0
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0
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619
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Comment: Comment: RNA-seq to look at the Effect of Viral Infection
7 weeks ago by swbarnes2 14k
0
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1
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552
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Comment: Comment: How to include the lane index in STARsolo count matrix barcodes.tsv?
9 weeks ago by swbarnes2 14k
0
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1
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935
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Comment: Comment: bcl2fastq
10 weeks ago by swbarnes2 14k
0
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0
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697
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Comment: Comment: Optical Duplicates
11 weeks ago by swbarnes2 14k
1
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1
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697
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Comment: Comment: Optical Duplicates
11 weeks ago by swbarnes2 14k
0
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1
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999
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Comment: Comment: Question about edgeR p-values/FDR values
12 weeks ago by swbarnes2 14k
1
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0
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548
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Comment: Comment: alignment to human transcriptome with Bowtie2
12 weeks ago by swbarnes2 14k
1
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0
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551
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Comment: Comment: Paired-end sequencing with inconsistent quality/number of reads
3 months ago by swbarnes2 14k
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1
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685
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Comment: Comment: Explanation of DESeq factor leveling
3 months ago by swbarnes2 14k
0
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1
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1.9k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
3 months ago by swbarnes2 14k
1
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1
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1.9k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
3 months ago by swbarnes2 14k
0
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2
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997
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Comment: Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
4 months ago by swbarnes2 14k
0
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1
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997
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Comment: Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
4 months ago by swbarnes2 14k
1
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1
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580
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Comment: Comment: RNASeq Analysis: data from different library
4 months ago by swbarnes2 14k
0
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1
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997
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Comment: Comment: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
4 months ago by swbarnes2 14k
0
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0
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773
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Comment: Comment: Chromium 5’ Next GEM single cell STARsolo
4 months ago by swbarnes2 14k
0
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0
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492
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Comment: Comment: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
4 months ago by swbarnes2 14k
0
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1
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474
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Comment: Comment: flipped BAM files in IGV after STAR aligner
5 months ago by swbarnes2 14k
0
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0
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1.4k
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Comment: Comment: Aligning reads from mouse samples that express 1 human gene
5 months ago by swbarnes2 14k
0
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0
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716
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Comment: Comment: Batch correction in RNAseq
5 months ago by swbarnes2 14k
0
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0
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663
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Comment: Comment: Merging two sequencing datasets
5 months ago by swbarnes2 14k
1
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0
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512
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Comment: Comment: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
6 months ago by swbarnes2 14k
0
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0
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670
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Comment: Comment: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
6 months ago by swbarnes2 14k
0
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1
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962
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Comment: Comment: bam is in a format that cannot be usefully indexed
6 months ago by swbarnes2 14k
1
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0
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1.1k
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Comment: Comment: Interaction analysis using DESeq while adjusting for covariates.
7 months ago by swbarnes2 14k
0
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0
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744
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Comment: Comment: RNA Seq Paired End High Duplication Rate
7 months ago by swbarnes2 14k
0
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0
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1.4k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
7 months ago by swbarnes2 14k
0
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0
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475
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Comment: Comment: Batch correction prior to running DESEQ2
7 months ago by swbarnes2 14k
0
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1
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1.4k
views
Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
7 months ago by swbarnes2 14k
0
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2
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1.4k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
7 months ago by swbarnes2 14k
1
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1
reply
1.1k
views
Comment: Comment: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
8 months ago by swbarnes2 14k
0
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1
reply
2.1k
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
8 months ago by swbarnes2 14k
0
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1
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2.1k
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
8 months ago by swbarnes2 14k
0
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0
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516
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Comment: Comment: Differentail gene expression results
8 months ago by swbarnes2 14k
0
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0
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762
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Comment: Comment: How to compute TPM normalized values for TCGA miRNA data?
8 months ago by swbarnes2 14k
0
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0
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1.4k
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Comment: Comment: Understanding STAR output (Aligned.out.sam file)
8 months ago by swbarnes2 14k
0
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0
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957
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
8 months ago by swbarnes2 14k
0
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0
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957
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
8 months ago by swbarnes2 14k
1
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0
replies
1.3k
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Comment: Comment: PCA plot (Suggestions Needed)
9 months ago by swbarnes2 14k
0
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1
reply
2.0k
views
Comment: Comment: Adding CB tag to bam file
9 months ago by swbarnes2 14k
1
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0
replies
1.3k
views
Comment: Comment: PCA plot (Suggestions Needed)
9 months ago by swbarnes2 14k
0
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0
replies
1.3k
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Comment: Comment: PCA plot (Suggestions Needed)
9 months ago by swbarnes2 14k
0
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1
reply
1.1k
views
Comment: Comment: To get p-values for the TPM
9 months ago by swbarnes2 14k
1
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0
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940
views
Comment: Comment: Should I use unpaired reads from trimmomatic
9 months ago by swbarnes2 14k
0
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1
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1.0k
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Comment: Comment: Marking duplicates using UMIs
9 months ago by swbarnes2 14k
0
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0
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869
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Comment: Comment: Free/open source 23andme-like analysis
9 months ago by swbarnes2 14k
0
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0
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2.1k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
9 months ago by swbarnes2 14k
0
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1
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2.0k
views
Comment: Comment: Adding CB tag to bam file
9 months ago by swbarnes2 14k
0
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0
replies
1.1k
views
Comment: Comment: RNA seq differential expression analysis
9 months ago by swbarnes2 14k
1,060 results • Page 1 of 22
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