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629
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Comment: Comment: bcl2fastq problems with the yield
4 months ago by swbarnes2 14k
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629
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Answer: Answer: bcl2fastq problems with the yield
4 months ago by swbarnes2 14k
1
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662
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Comment: Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
4 months ago by swbarnes2 14k
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475
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Answer: Answer: Are 10x cellranger-arc ATAC bam files deduplicated?
5 months ago by swbarnes2 14k
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0
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397
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Answer: Answer: Bulk and Single Cell RNA-seq online course
5 months ago by swbarnes2 14k
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0
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817
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Answer: Answer: STAR ALIGNMENT
5 months ago by swbarnes2 14k
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0
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817
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Comment: Comment: STAR ALIGNMENT
5 months ago by swbarnes2 14k
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1
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935
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Answer: Answer: Handling multiple fastq files per sample, per lane, per read out of the Cellrang
5 months ago by swbarnes2 14k
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1
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832
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
5 months ago by swbarnes2 14k
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0
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749
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Answer: Answer: RNAseq how to map Mouse+Virus Genome with STAR
5 months ago by swbarnes2 14k
1
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0
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967
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Comment: Comment: deal with PCA and my samples
6 months ago by swbarnes2 14k
2
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0
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743
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Answer: Answer: batch correction in DESeq2
6 months ago by swbarnes2 14k
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1.3k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by swbarnes2 14k
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1
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1.3k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by swbarnes2 14k
0
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1
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593
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
6 months ago by swbarnes2 14k
0
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0
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460
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Answer: Answer: Help with DESeq2 Analysis of Multiple Conditions
6 months ago by swbarnes2 14k
0
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0
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753
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Comment: Comment: DESeq2: DESeqDataSetFromMatrix Error
6 months ago by swbarnes2 14k
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1
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753
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Answer: Answer: DESeq2: DESeqDataSetFromMatrix Error
6 months ago by swbarnes2 14k
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0
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533
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Comment: Comment: Use SAM files in ref_map.pl
6 months ago by swbarnes2 14k
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0
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619
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Comment: Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
6 months ago by swbarnes2 14k
1
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1
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900
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Answer: Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
7 months ago by swbarnes2 14k
1
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1
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750
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Answer: Answer: DESeq2 analysis using two featureCounts generated from different studies
7 months ago by swbarnes2 14k
1
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1
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1.1k
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Comment: Comment: Adding a control sample to bulk RNA-seq
7 months ago by swbarnes2 14k
0
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0
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733
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Comment: Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
7 months ago by swbarnes2 14k
5
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1
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1.1k
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Answer: Answer: Adding a control sample to bulk RNA-seq
7 months ago by swbarnes2 14k
1
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0
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565
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
7 months ago by swbarnes2 14k
2
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0
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513
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Answer: Answer: DESeq2 design comparing changes through 2 timepoints of 2 different treatments.
7 months ago by swbarnes2 14k
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0
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501
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Answer: Answer: sequencing machines output files layout
7 months ago by swbarnes2 14k
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1
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536
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Answer: Answer: DESeqDataSetFromMatrix error
7 months ago by swbarnes2 14k
0
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0
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460
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Answer: Answer: Deseq2
7 months ago by swbarnes2 14k
0
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1
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576
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Comment: Comment: htseq-count reports count values for deleted genes
7 months ago by swbarnes2 14k
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0
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742
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Comment: Comment: How to Add Mutations to the sequence
8 months ago by swbarnes2 14k
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0
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1.3k
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Comment: Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
8 months ago by swbarnes2 14k
2
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1.2k
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Comment: Comment: STAR mapping - regarding output files content
8 months ago by swbarnes2 14k
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0
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930
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Comment: Comment: RSEM uses different gene lengths for each sample.
8 months ago by swbarnes2 14k
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0
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752
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Answer: Answer: DESEQ2 analysis - PCA plot
8 months ago by swbarnes2 14k
0
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0
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711
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Comment: Comment: Can I extract a complete sequence of gene from mapped reads bam file
9 months ago by swbarnes2 14k
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0
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463
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Answer: Answer: Add gene counts of same samples run on two lanes (Novaseq)
9 months ago by swbarnes2 14k
2
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1
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636
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Answer: Answer: bcl2fastq not recognizing multiple barcode-mismatch argument
9 months ago by swbarnes2 14k
1
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0
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1.1k
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Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
9 months ago by swbarnes2 14k
0
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1
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1.1k
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Answer: Answer: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
9 months ago by swbarnes2 14k
1
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0
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677
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Answer: Answer: 10x genomics hashtag samples
9 months ago by swbarnes2 14k
1
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1
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621
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Answer: Answer: DESeq2, Time-course interpretation
9 months ago by swbarnes2 14k
4
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0
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1.9k
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Answer: Answer: Multiple testing correction in RNA-Seq
10 months ago by swbarnes2 14k
1
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0
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1.2k
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Comment: Comment: Transcript quantification
10 months ago by swbarnes2 14k
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0
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2.2k
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Answer: Answer: How to create a Seurat object from the `xxx_metadata.txt.gz ` and `xxx_counts.t
10 months ago by swbarnes2 14k
0
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0
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1.8k
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Comment: Comment: Getting sequences from fastq file using Grep command
10 months ago by swbarnes2 14k
0
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1
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1.8k
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Answer: Answer: Getting sequences from fastq file using Grep command
10 months ago by swbarnes2 14k
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0
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1.3k
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Comment: Comment: A question about the raw RNA-seq processing workflow
10 months ago by swbarnes2 14k
0
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1
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1.3k
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Comment: Comment: A question about the raw RNA-seq processing workflow
10 months ago by swbarnes2 14k
1,998 results • Page 2 of 40
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