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676
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Answer: Answer: Variant callers for single cell WGS
8 months ago by swbarnes2 14k
0
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1
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1.4k
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Answer: Answer: How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 tim
8 months ago by swbarnes2 14k
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0
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1.2k
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Comment: Comment: Chromium 5’ Next GEM single cell STARsolo
8 months ago by swbarnes2 14k
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2
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1.2k
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Answer: Answer: Chromium 5’ Next GEM single cell STARsolo
8 months ago by swbarnes2 14k
0
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0
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804
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Comment: Comment: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
8 months ago by swbarnes2 14k
0
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1
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774
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Answer: Answer: DEseq2 with different designs matrix
8 months ago by swbarnes2 14k
2
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0
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599
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Answer: Answer: DEseq2 interactions
9 months ago by swbarnes2 14k
2
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0
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1.1k
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Answer: Answer: are illumina fastq files typically split by lane?
9 months ago by swbarnes2 14k
1
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1
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586
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Answer: Answer: Time-series statistics for a small amount of genes
9 months ago by swbarnes2 14k
0
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1
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713
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Comment: Comment: flipped BAM files in IGV after STAR aligner
9 months ago by swbarnes2 14k
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0
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1.8k
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Comment: Comment: Aligning reads from mouse samples that express 1 human gene
9 months ago by swbarnes2 14k
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0
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1.1k
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Comment: Comment: Batch correction in RNAseq
9 months ago by swbarnes2 14k
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0
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2.0k
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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
9 months ago by swbarnes2 14k
0
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0
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955
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Comment: Comment: Merging two sequencing datasets
9 months ago by swbarnes2 14k
0
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0
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955
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Answer: Answer: Merging two sequencing datasets
10 months ago by swbarnes2 14k
1
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0
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829
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Comment: Comment: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
10 months ago by swbarnes2 14k
2
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1
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829
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Answer: Answer: Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
10 months ago by swbarnes2 14k
0
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0
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1.0k
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Comment: Comment: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
10 months ago by swbarnes2 14k
0
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1
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1.0k
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Answer: Answer: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
10 months ago by swbarnes2 14k
0
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1
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1.5k
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Comment: Comment: bam is in a format that cannot be usefully indexed
10 months ago by swbarnes2 14k
1
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0
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546
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Answer: Answer: DESeq2 sizeFactor for Bacterial RNASeq
10 months ago by swbarnes2 14k
0
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0
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1.7k
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Answer: Answer: Bacterial RNASeq doubts
10 months ago by swbarnes2 14k
1
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1
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1.2k
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Answer: Answer: Not retrieving Mitochondrial Genes in Single Cell analysis
10 months ago by swbarnes2 14k
1
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1
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1.0k
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Answer: Answer: Two different RNA sequencing sets that have gene names set up differently - how
10 months ago by swbarnes2 14k
5
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1
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3.6k
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Answer: Answer: Good Bioinformatics Jokes/Puns?
10 months ago by swbarnes2 14k
0
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1
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569
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Answer: Answer: Batch effects in RNAseq
11 months ago by swbarnes2 14k
1
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0
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1.7k
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Comment: Comment: Interaction analysis using DESeq while adjusting for covariates.
11 months ago by swbarnes2 14k
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0
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1.0k
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Comment: Comment: RNA Seq Paired End High Duplication Rate
11 months ago by swbarnes2 14k
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0
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2.0k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
11 months ago by swbarnes2 14k
0
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0
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662
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Comment: Comment: Batch correction prior to running DESEQ2
11 months ago by swbarnes2 14k
0
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2
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1.0k
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Answer: Answer: RNA Seq Paired End High Duplication Rate
11 months ago by swbarnes2 14k
0
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1
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2.0k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
11 months ago by swbarnes2 14k
0
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2
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2.0k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
11 months ago by swbarnes2 14k
2
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1
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2.0k
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Answer: Answer: RNA-seq differentially expressed genes (DEGs) with low fold change values
11 months ago by swbarnes2 14k
1
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1
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1.6k
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Comment: Comment: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
11 months ago by swbarnes2 14k
2
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0
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772
views
Answer: Answer: Help me with Heatmap
updated 12 months ago by 12k • written 12 months ago by 14k
6
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1
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1.6k
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Answer: Answer: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
12 months ago by swbarnes2 14k
0
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1
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885
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Answer: Answer: Design for complex RNA-Seq experiment using Deseq2
12 months ago by swbarnes2 14k
0
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1
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2.6k
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
12 months ago by swbarnes2 14k
0
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1
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2.6k
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
12 months ago by swbarnes2 14k
0
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1
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1.6k
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Answer: Answer: In IGV is this a heterogeneous mutation or false call?
12 months ago by swbarnes2 14k
0
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0
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677
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Comment: Comment: Differentail gene expression results
12 months ago by swbarnes2 14k
0
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0
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1.1k
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Comment: Comment: How to compute TPM normalized values for TCGA miRNA data?
12 months ago by swbarnes2 14k
0
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0
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2.0k
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Comment: Comment: Understanding STAR output (Aligned.out.sam file)
12 months ago by swbarnes2 14k
0
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1
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1.0k
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Answer: Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
12 months ago by swbarnes2 14k
0
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0
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1.3k
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
12 months ago by swbarnes2 14k
0
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1
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1.4k
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Answer: Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
12 months ago by swbarnes2 14k
0
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0
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1.3k
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
12 months ago by swbarnes2 14k
0
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0
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936
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Answer: Answer: Sequence read length shorter than flow cell specification
13 months ago by swbarnes2 14k
1
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0
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1.7k
views
Comment: Comment: PCA plot (Suggestions Needed)
13 months ago by swbarnes2 14k
2,096 results • Page 2 of 42
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