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Answer: Answer: Multiple testing correction in RNA-Seq
10 months ago by swbarnes2 14k
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Answer: Answer: How to create a Seurat object from the `xxx_metadata.txt.gz ` and `xxx_counts.t
11 months ago by swbarnes2 14k
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1
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1.9k
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Answer: Answer: Getting sequences from fastq file using Grep command
11 months ago by swbarnes2 14k
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2
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1.3k
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Answer: Answer: Italicise annotations with pheatmap
11 months ago by swbarnes2 14k
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Answer: Answer: What is the best way to clean bulk RNA-seq data?
11 months ago by swbarnes2 14k
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2
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1.9k
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Answer: Answer: Counting intronic reads in bulk RNA-seq
11 months ago by swbarnes2 14k
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1.5k
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Answer: Answer: Single cell chemistry
11 months ago by swbarnes2 14k
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657
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Answer: Answer: How to extract out gene specific reads from concatenated fastq file
11 months ago by swbarnes2 14k
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894
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Answer: Answer: rna seq design matrix
12 months ago by swbarnes2 14k
1
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489
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Answer: Answer: Different read numbers for the same samples
12 months ago by swbarnes2 14k
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2.6k
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Answer: Answer: Subsetting DESeq data set to compare treatments within one group (multi-group ex
12 months ago by swbarnes2 14k
2
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857
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Answer: Answer: How to better distribute my replicates between two batches of bulk RNAseq?
12 months ago by swbarnes2 14k
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857
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Answer: Answer: Problematic experimental design RNA-Seq
12 months ago by swbarnes2 14k
2
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3
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Answer: Answer: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by swbarnes2 14k
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678
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Answer: Answer: Issue running RSEM
12 months ago by swbarnes2 14k
2
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1
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695
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Answer: Answer: Fastqs different lanes
12 months ago by swbarnes2 14k
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1.0k
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Answer: Answer: batch effect in RNA-Seq
13 months ago by swbarnes2 14k
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1.1k
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Answer: Answer: Is there anyway to cancel CPM normalization?
13 months ago by swbarnes2 14k
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6.0k
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Answer: Answer: How Can I Compare Differential Expression Data From Mouse And Human?
13 months ago by swbarnes2 14k
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803
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Answer: Answer: Detecting heterozygous deletions in NGS sequence data
13 months ago by swbarnes2 14k
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1.1k
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Answer: Answer: Big BCV (Biological Coefficient of Variation) - no sense to continue the analysi
14 months ago by swbarnes2 14k
1
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859
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Answer: Answer: How to combine different "groups" in DESeq2 constrast
14 months ago by swbarnes2 14k
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684
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Answer: Answer: cellranger outcome
14 months ago by swbarnes2 14k
2
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1
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2.6k
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Answer: Answer: Batch effect in integrated RNA-seq analysis
14 months ago by swbarnes2 14k
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869
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Answer: Answer: Samtools unmapped reads
15 months ago by swbarnes2 14k
1
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1.3k
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Answer: Answer: Question about RNA-Seq data alignment
15 months ago by swbarnes2 14k
0
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1.1k
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Answer: Answer: Samtools mapped and unmapped flags, what is the difference between the flags?
15 months ago by swbarnes2 14k
4
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1
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912
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Answer: Answer: Reads are marked as full of mismatches in IGV, but cigar string shows full lengt
15 months ago by swbarnes2 14k
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1.4k
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Answer: Answer: RNA-seq library size - significant sample discrepency
16 months ago by swbarnes2 14k
1
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2.7k
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Answer: Answer: STAR aligner can't map too short reads
16 months ago by swbarnes2 14k
1
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0
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887
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Answer: Answer: Is DeSeq2 or EdgeR better for differential expression of QuantSeq data?
16 months ago by swbarnes2 14k
1
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2
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825
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Answer: Answer: RNA sequencing analysis
17 months ago by swbarnes2 14k
0
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0
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944
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Answer: Answer: Good practices for RNA-seq (2x50, 2x75, 2x100) aligment with STAR + RSEM
17 months ago by swbarnes2 14k
3
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1.2k
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Answer: Answer: FPKM file differentilly gene anaylsis
17 months ago by swbarnes2 14k
1
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523
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Answer: Answer: Why does `bowtie` only find perfect matches even when specifying mismatches? (ie
17 months ago by swbarnes2 14k
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2.5k
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Answer: Answer: How to find rna strand direction before alignment?
17 months ago by swbarnes2 14k
0
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1
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777
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Answer: Answer: Gene Tracks from 10x Data
17 months ago by swbarnes2 14k
3
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1.3k
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Answer: Answer: Compare two RNA-Seq log2fc tables
17 months ago by swbarnes2 14k
0
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1
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717
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Answer: Answer: What kind of statistics to use to compare logFold values?
18 months ago by swbarnes2 14k
0
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0
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1.7k
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Answer: Answer: featureCounts paired end reads wrongly assigned on the single end mode
18 months ago by swbarnes2 14k
1
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0
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884
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Answer: Answer: Aligning reads from mouse samples that express 1 human gene
18 months ago by swbarnes2 14k
0
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1
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1.3k
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Answer: Answer: Interpreting time-series analysis with DESeq2 output
18 months ago by swbarnes2 14k
1
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0
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1.0k
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Answer: Answer: Pan-cancer RNA-seq data normalization
18 months ago by swbarnes2 14k
0
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1
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955
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Answer: Answer: DESeq2 MA plot - linear relationship for pooled amplicons
18 months ago by swbarnes2 14k
0
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1
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3.2k
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Answer: Answer: Confused about % of mapped and unmapped reads output from STAR aligner
18 months ago by swbarnes2 14k
0
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0
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1.9k
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Answer: Answer: What are Tiles in Sequencing
19 months ago by swbarnes2 14k
1
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1
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1.3k
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Answer: Answer: Multi factor analysis in DESeq2 and design formula
19 months ago by swbarnes2 14k
1
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1
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2.3k
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Answer: Answer: Confused with output of STAR aligner for paired end reads and need advice on clo
19 months ago by swbarnes2 14k
2
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1
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851
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Answer: Answer: Log fold change from rlog
19 months ago by swbarnes2 14k
0
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0
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1.7k
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Answer: Answer: Quantseq 3' seq alignment with kallisto
19 months ago by swbarnes2 14k
975 results • Page 2 of 20
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