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Are reference sequences from GENCODE, Ensembl and RefSeq the same if they are called GRCh38.p10, it is just the annotation that varies?
RNA-Seq
reference genome
annotations
GRCh38
6.7 years ago by
amina.mcdiarmid
▴ 10
0
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39k
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Comment:
C: hg38 annotation file (gtf) UCSC format
6.7 years ago by
amina.mcdiarmid
▴ 10
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0
replies
7.4k
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Comment:
C: Homo_sapiens.GRCh38.91.chr.gtf.gz or Homo_sapiens.GRCh38.91.gtf.gz for different
6.7 years ago by
amina.mcdiarmid
▴ 10
3
votes
3
replies
7.4k
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Homo_sapiens.GRCh38.91.chr.gtf.gz or Homo_sapiens.GRCh38.91.gtf.gz for differential expression of RNA-seq data?
RNA-Seq
ensembl
genome
annotation
updated 6.7 years ago by
Devon Ryan
104k • written 6.7 years ago by
amina.mcdiarmid
▴ 10
0
votes
1
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15k
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Comment:
C: Difference between GTF file with CHR and without CHR. ENSEMBL
6.7 years ago by
amina.mcdiarmid
▴ 10
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