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Comment: Comment: DEGseq - 3 conditions
23 months ago by Shred ★ 1.5k
0
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1
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737
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Comment: Comment: DEGseq - 3 conditions
23 months ago by Shred ★ 1.5k
0
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0
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867
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
23 months ago by Shred ★ 1.5k
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1
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867
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
24 months ago by Shred ★ 1.5k
2
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1
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1.6k
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Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
24 months ago by Shred ★ 1.5k
2
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0
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1.6k
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Answer: Answer: Get both somatic and germline mutations from tumor only sample?
2.0 years ago by Shred ★ 1.5k
1
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1
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733
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Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
2.0 years ago by Shred ★ 1.5k
3
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1
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1.4k
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Comment: Comment: Variant identified, What next?
2.0 years ago by Shred ★ 1.5k
2
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0
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876
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
2.1 years ago by Shred ★ 1.5k
1
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1
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1.1k
views
Comment: Comment: Reading in input file into a Snakemake pipeline
2.1 years ago by Shred ★ 1.5k
3
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1
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1.1k
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Answer: Answer: Reading in input file into a Snakemake pipeline
2.1 years ago by Shred ★ 1.5k
0
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0
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1.4k
views
Comment: Comment: Cannot call haplotypes on bam
2.1 years ago by Shred ★ 1.5k
3
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1
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865
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Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
2.1 years ago by Shred ★ 1.5k
0
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1
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1.4k
views
Comment: Comment: Cannot call haplotypes on bam
2.1 years ago by Shred ★ 1.5k
0
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1
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1.4k
views
Comment: Comment: Cannot call haplotypes on bam
2.1 years ago by Shred ★ 1.5k
1
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1
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1.1k
views
Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
2.1 years ago by Shred ★ 1.5k
1
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2
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1.1k
views
Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
2.1 years ago by Shred ★ 1.5k
0
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1
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1.2k
views
Comment: Comment: Increased GC content after trimming RNAseq data
2.1 years ago by Shred ★ 1.5k
3
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0
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935
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Answer: Answer: Figuring out if a gene exists in a genome
2.2 years ago by Shred ★ 1.5k
2
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1
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940
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Answer: Answer: Python pandas transforming int to float in gff subsetting
2.2 years ago by Shred ★ 1.5k
0
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0
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1.2k
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Answer: Answer: How to count the number of multimapped reads from a bam file?
2.2 years ago by Shred ★ 1.5k
0
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0
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526
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Comment: Comment: Wildcards Snakemake using bedtools
2.2 years ago by Shred ★ 1.5k
1
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1
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1.7k
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Comment: Comment: Running salmon in alignment mode?
2.3 years ago by Shred ★ 1.5k
0
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1
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822
views
Comment: Comment: How to make predictions on genes not involved in a particular disease
2.3 years ago by Shred ★ 1.5k
0
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0
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824
views
Comment: Comment: Which statistical test should be used for comparison of a single gene expression
2.3 years ago by Shred ★ 1.5k
0
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0
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1.5k
views
Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
2.3 years ago by Shred ★ 1.5k
0
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0
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862
views
Comment: Comment: WGCNA functions not found
2.3 years ago by Shred ★ 1.5k
1
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1
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1.8k
views
Comment: Comment: For loop in R
2.3 years ago by Shred ★ 1.5k
0
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0
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985
views
Comment: Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
2.3 years ago by Shred ★ 1.5k
0
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1
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985
views
Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
2.3 years ago by Shred ★ 1.5k
2
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1
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1.8k
views
Answer: Answer: snakemake workflow
2.3 years ago by Shred ★ 1.5k
2
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0
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750
views
Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
2.4 years ago by Shred ★ 1.5k
0
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0
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1.5k
views
Comment: Comment: Best transcriptome assembler
2.4 years ago by Shred ★ 1.5k
1
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1
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1.5k
views
Answer: Answer: Best transcriptome assembler
2.4 years ago by Shred ★ 1.5k
0
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1
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1.5k
views
Comment: Comment: Best transcriptome assembler
2.4 years ago by Shred ★ 1.5k
1
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0
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3.4k
views
Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
2.4 years ago by Shred ★ 1.5k
1
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1
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3.0k
views
Comment: Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
2.5 years ago by Shred ★ 1.5k
1
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1
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942
views
Comment: Comment: lncRNA analysis
2.5 years ago by Shred ★ 1.5k
0
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0
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626
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Comment: Comment: why Mutect2 calls some germline variants as somatic ones?
2.5 years ago by Shred ★ 1.5k
0
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0
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781
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Comment: Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
2.5 years ago by Shred ★ 1.5k
1
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0
replies
1.0k
views
Answer: Answer: How to change gene coordinate in gtf file?
2.5 years ago by Shred ★ 1.5k
1
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0
replies
800
views
Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
2.5 years ago by Shred ★ 1.5k
0
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0
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2.3k
views
Comment: Comment: featureCounts parameters
2.5 years ago by Shred ★ 1.5k
0
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0
replies
2.3k
views
Comment: Comment: featureCounts parameters
2.5 years ago by Shred ★ 1.5k
1
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0
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4.1k
views
Comment: Comment: Install required dependencies for GATK4 on remote server without root privilege
2.5 years ago by Shred ★ 1.5k
0
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1
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2.3k
views
Comment: Comment: featureCounts parameters
2.5 years ago by Shred ★ 1.5k
0
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2
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2.3k
views
Comment: Comment: featureCounts parameters
2.5 years ago by Shred ★ 1.5k
0
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1
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1.5k
views
Comment: Comment: How can I bring similar columns from two different tables side by side?
2.6 years ago by Shred ★ 1.5k
0
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0
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2.0k
views
Answer: Answer: Help with writing a loop for metaspades assembler (beginner)
2.6 years ago by Shred ★ 1.5k
1
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1
reply
4.7k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.6 years ago by Shred ★ 1.5k
247 results • Page 3 of 5
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