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Comment: Comment: Convert excel to json with python
2.4 years ago by Shred ★ 1.6k
2
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1
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814
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Answer: Answer: Get a vector of 0 and 1 using codon positions
2.4 years ago by Shred ★ 1.6k
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938
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Comment: Comment: Index error in python
2.4 years ago by Shred ★ 1.6k
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1
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938
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Comment: Comment: Index error in python
2.4 years ago by Shred ★ 1.6k
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0
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700
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Answer: Answer: Match keys in json file with csv files
2.4 years ago by Shred ★ 1.6k
2
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1
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2.9k
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Answer: Answer: Upset plot using python
2.5 years ago by Shred ★ 1.6k
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1.0k
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Comment: Comment: Clean data with pandas
2.5 years ago by Shred ★ 1.6k
2
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1
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1.0k
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Answer: Answer: Clean data with pandas
2.5 years ago by Shred ★ 1.6k
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2.4k
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Comment: Comment: The conversion Ensembl ID into Gene symbol
2.5 years ago by Shred ★ 1.6k
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1
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858
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Comment: Comment: Benchmark data for variant calling assessment
2.5 years ago by Shred ★ 1.6k
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1
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2.5k
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
2.5 years ago by Shred ★ 1.6k
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1
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2.5k
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
2.5 years ago by Shred ★ 1.6k
1
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0
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857
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Comment: Comment: Running several rounds of the same rule in Snakemake
2.5 years ago by Shred ★ 1.6k
0
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1
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2.5k
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Answer: Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
2.5 years ago by Shred ★ 1.6k
1
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1
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943
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Comment: Comment: DEGseq - 3 conditions
2.5 years ago by Shred ★ 1.6k
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1
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943
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Comment: Comment: DEGseq - 3 conditions
2.5 years ago by Shred ★ 1.6k
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1.1k
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
2.6 years ago by Shred ★ 1.6k
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1
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1.1k
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
2.6 years ago by Shred ★ 1.6k
2
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1
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2.0k
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Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
2.6 years ago by Shred ★ 1.6k
2
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0
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2.0k
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Answer: Answer: Get both somatic and germline mutations from tumor only sample?
2.6 years ago by Shred ★ 1.6k
1
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1
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925
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Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
2.6 years ago by Shred ★ 1.6k
3
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1
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1.8k
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Comment: Comment: Variant identified, What next?
2.6 years ago by Shred ★ 1.6k
2
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0
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1.1k
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
2.7 years ago by Shred ★ 1.6k
1
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1
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1.4k
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Comment: Comment: Reading in input file into a Snakemake pipeline
2.7 years ago by Shred ★ 1.6k
3
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1
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1.4k
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Answer: Answer: Reading in input file into a Snakemake pipeline
2.7 years ago by Shred ★ 1.6k
0
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0
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1.7k
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Comment: Comment: Cannot call haplotypes on bam
2.7 years ago by Shred ★ 1.6k
3
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1
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1.1k
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Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
2.7 years ago by Shred ★ 1.6k
0
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1
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1.7k
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Comment: Comment: Cannot call haplotypes on bam
2.7 years ago by Shred ★ 1.6k
0
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1
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1.7k
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Comment: Comment: Cannot call haplotypes on bam
2.7 years ago by Shred ★ 1.6k
1
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1
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1.3k
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Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
2.8 years ago by Shred ★ 1.6k
1
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2
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1.3k
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Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
2.8 years ago by Shred ★ 1.6k
0
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1
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1.5k
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Comment: Comment: Increased GC content after trimming RNAseq data
2.8 years ago by Shred ★ 1.6k
3
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0
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1.2k
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Answer: Answer: Figuring out if a gene exists in a genome
2.8 years ago by Shred ★ 1.6k
2
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1
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1.2k
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Answer: Answer: Python pandas transforming int to float in gff subsetting
2.8 years ago by Shred ★ 1.6k
0
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0
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1.4k
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Answer: Answer: How to count the number of multimapped reads from a bam file?
2.8 years ago by Shred ★ 1.6k
0
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0
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654
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Comment: Comment: Wildcards Snakemake using bedtools
2.8 years ago by Shred ★ 1.6k
1
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1
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2.0k
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Comment: Comment: Running salmon in alignment mode?
2.9 years ago by Shred ★ 1.6k
0
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1
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973
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Comment: Comment: How to make predictions on genes not involved in a particular disease
2.9 years ago by Shred ★ 1.6k
0
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0
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999
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Comment: Comment: Which statistical test should be used for comparison of a single gene expression
2.9 years ago by Shred ★ 1.6k
0
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0
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1.9k
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Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
2.9 years ago by Shred ★ 1.6k
0
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0
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1.1k
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Comment: Comment: WGCNA functions not found
2.9 years ago by Shred ★ 1.6k
1
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1
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2.4k
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Comment: Comment: For loop in R
2.9 years ago by Shred ★ 1.6k
0
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0
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1.2k
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Comment: Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
2.9 years ago by Shred ★ 1.6k
0
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1
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1.2k
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Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
2.9 years ago by Shred ★ 1.6k
2
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1
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2.2k
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Answer: Answer: snakemake workflow
2.9 years ago by Shred ★ 1.6k
2
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0
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941
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Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
3.0 years ago by Shred ★ 1.6k
1
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0
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2.1k
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Comment: Comment: Best transcriptome assembler
3.0 years ago by Shred ★ 1.6k
1
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1
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2.1k
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Answer: Answer: Best transcriptome assembler
3.0 years ago by Shred ★ 1.6k
0
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1
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2.1k
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Comment: Comment: Best transcriptome assembler
3.0 years ago by Shred ★ 1.6k
1
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0
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3.9k
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
3.1 years ago by Shred ★ 1.6k
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