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Comment:
Comment: Retrieve count table from bam file using genomic coordinates
18 days ago by
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548
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Comment:
Comment: Retrieve count table from bam file using genomic coordinates
19 days ago by
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548
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Comment:
Comment: Retrieve count table from bam file using genomic coordinates
19 days ago by
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2
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346
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Answer:
Answer: Snakemake Target rules may not contain wildcards.
7 weeks ago by
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0
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0
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177
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Answer:
Answer: Change column order in vcf file
7 weeks ago by
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482
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Comment:
Comment: What is the best time saving way to loop over column elements in pandas DF and r
10 weeks ago by
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482
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Answer:
Answer: What is the best time saving way to loop over column elements in pandas DF and r
10 weeks ago by
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0
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245
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Comment:
Comment: Convert excel to json with python
10 weeks ago by
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2
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234
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Answer:
Answer: Get a vector of 0 and 1 using codon positions
10 weeks ago by
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0
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279
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Comment:
Comment: Index error in python
11 weeks ago by
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279
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Comment:
Comment: Index error in python
11 weeks ago by
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198
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Answer:
Answer: Match keys in json file with csv files
11 weeks ago by
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2
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464
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Answer:
Answer: Upset plot using python
12 weeks ago by
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333
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Comment:
Comment: Clean data with pandas
3 months ago by
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2
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333
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Answer:
Answer: Clean data with pandas
3 months ago by
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448
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Comment:
Comment: The conversion Ensembl ID into Gene symbol
3 months ago by
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263
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Comment:
Comment: Benchmark data for variant calling assessment
3 months ago by
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1
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704
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Comment:
Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
3 months ago by
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704
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Comment:
Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
3 months ago by
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1
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0
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300
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Comment:
Comment: Running several rounds of the same rule in Snakemake
3 months ago by
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1
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704
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Answer:
Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
3 months ago by
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1
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1
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268
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Comment:
Comment: DEGseq - 3 conditions
3 months ago by
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268
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Comment:
Comment: DEGseq - 3 conditions
3 months ago by
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0
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320
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Comment:
Comment: Htseq-count output file having a high number of __not_aligned
4 months ago by
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320
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Comment:
Comment: Htseq-count output file having a high number of __not_aligned
4 months ago by
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2
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1
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737
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Comment:
Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
4 months ago by
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2
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0
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368
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Answer:
Answer: Get both somatic and germline mutations from tumor only sample?
5 months ago by
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1
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374
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Answer:
Answer: Why a gene with amplification in copy number shows downregulation in transcripto
5 months ago by
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3
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1
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701
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Comment:
Comment: Variant identified, What next?
5 months ago by
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2
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0
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343
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Answer:
Answer: How to create a fasta file using a list of DNA sequences data
5 months ago by
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1
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1
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504
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Comment:
Comment: Reading in input file into a Snakemake pipeline
5 months ago by
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3
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1
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504
views
Answer:
Answer: Reading in input file into a Snakemake pipeline
5 months ago by
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▴ 990
0
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0
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747
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Comment:
Comment: Cannot call haplotypes on bam
5 months ago by
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2
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1
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426
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Comment:
Comment: Feature selection for a binary classifier using mixed cancer type samples
5 months ago by
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0
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1
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747
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Comment:
Comment: Cannot call haplotypes on bam
5 months ago by
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▴ 990
0
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1
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747
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Comment:
Comment: Cannot call haplotypes on bam
5 months ago by
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1
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1
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591
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Comment:
Comment: is there any pipeline or best practices of detecting germline neoantigen?
6 months ago by
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1
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2
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591
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Answer:
Answer: is there any pipeline or best practices of detecting germline neoantigen?
6 months ago by
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0
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1
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565
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Comment:
Comment: Increased GC content after trimming RNAseq data
6 months ago by
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3
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0
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465
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Answer:
Answer: Figuring out if a gene exists in a genome
6 months ago by
Shred
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2
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1
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436
views
Answer:
Answer: Python pandas transforming int to float in gff subsetting
6 months ago by
Shred
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0
votes
0
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433
views
Answer:
Answer: How to count the number of multimapped reads from a bam file?
7 months ago by
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▴ 990
0
votes
0
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223
views
Comment:
Comment: Wildcards Snakemake using bedtools
7 months ago by
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1
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1
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893
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Comment:
Comment: Running salmon in alignment mode?
7 months ago by
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0
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1
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474
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Comment:
Comment: How to make predictions on genes not involved in a particular disease
7 months ago by
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▴ 990
0
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0
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453
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Comment:
Comment: Which statistical test should be used for comparison of a single gene expression
8 months ago by
Shred
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0
votes
0
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498
views
Answer:
Answer: How to extract passed SNVs from a VCF file using bcftools?
8 months ago by
Shred
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0
votes
0
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419
views
Comment:
Comment: WGCNA functions not found
8 months ago by
Shred
▴ 990
1
vote
1
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753
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Comment:
Comment: For loop in R
8 months ago by
Shred
▴ 990
0
votes
0
replies
454
views
Comment:
Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
8 months ago by
Shred
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