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Comment: Comment: Retrieve count table from bam file using genomic coordinates
18 days ago by Shred ▴ 990
0
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1
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548
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Comment: Comment: Retrieve count table from bam file using genomic coordinates
19 days ago by Shred ▴ 990
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1
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548
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Comment: Comment: Retrieve count table from bam file using genomic coordinates
19 days ago by Shred ▴ 990
2
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1
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346
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Answer: Answer: Snakemake Target rules may not contain wildcards.
7 weeks ago by Shred ▴ 990
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177
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Answer: Answer: Change column order in vcf file
7 weeks ago by Shred ▴ 990
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1
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482
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Comment: Comment: What is the best time saving way to loop over column elements in pandas DF and r
10 weeks ago by Shred ▴ 990
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1
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482
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Answer: Answer: What is the best time saving way to loop over column elements in pandas DF and r
10 weeks ago by Shred ▴ 990
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0
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245
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Comment: Comment: Convert excel to json with python
10 weeks ago by Shred ▴ 990
2
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1
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234
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Answer: Answer: Get a vector of 0 and 1 using codon positions
10 weeks ago by Shred ▴ 990
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0
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279
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Comment: Comment: Index error in python
11 weeks ago by Shred ▴ 990
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1
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279
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Comment: Comment: Index error in python
11 weeks ago by Shred ▴ 990
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198
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Answer: Answer: Match keys in json file with csv files
11 weeks ago by Shred ▴ 990
2
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1
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464
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Answer: Answer: Upset plot using python
12 weeks ago by Shred ▴ 990
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1
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333
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Comment: Comment: Clean data with pandas
3 months ago by Shred ▴ 990
2
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1
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333
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Answer: Answer: Clean data with pandas
3 months ago by Shred ▴ 990
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1
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448
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Comment: Comment: The conversion Ensembl ID into Gene symbol
3 months ago by Shred ▴ 990
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1
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263
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Comment: Comment: Benchmark data for variant calling assessment
3 months ago by Shred ▴ 990
1
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1
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704
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
3 months ago by Shred ▴ 990
0
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1
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704
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
3 months ago by Shred ▴ 990
1
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0
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300
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Comment: Comment: Running several rounds of the same rule in Snakemake
3 months ago by Shred ▴ 990
0
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1
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704
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Answer: Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
3 months ago by Shred ▴ 990
1
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1
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268
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Comment: Comment: DEGseq - 3 conditions
3 months ago by Shred ▴ 990
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1
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268
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Comment: Comment: DEGseq - 3 conditions
3 months ago by Shred ▴ 990
0
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0
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320
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
4 months ago by Shred ▴ 990
0
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1
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320
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
4 months ago by Shred ▴ 990
2
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1
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737
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Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
4 months ago by Shred ▴ 990
2
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0
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368
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Answer: Answer: Get both somatic and germline mutations from tumor only sample?
5 months ago by Shred ▴ 990
1
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1
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374
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Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
5 months ago by Shred ▴ 990
3
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1
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701
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Comment: Comment: Variant identified, What next?
5 months ago by Shred ▴ 990
2
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0
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343
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
5 months ago by Shred ▴ 990
1
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1
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504
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Comment: Comment: Reading in input file into a Snakemake pipeline
5 months ago by Shred ▴ 990
3
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1
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504
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Answer: Answer: Reading in input file into a Snakemake pipeline
5 months ago by Shred ▴ 990
0
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0
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747
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Comment: Comment: Cannot call haplotypes on bam
5 months ago by Shred ▴ 990
2
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1
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426
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Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
5 months ago by Shred ▴ 990
0
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1
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747
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Comment: Comment: Cannot call haplotypes on bam
5 months ago by Shred ▴ 990
0
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1
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747
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Comment: Comment: Cannot call haplotypes on bam
5 months ago by Shred ▴ 990
1
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1
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591
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Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
6 months ago by Shred ▴ 990
1
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2
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591
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Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
6 months ago by Shred ▴ 990
0
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1
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565
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Comment: Comment: Increased GC content after trimming RNAseq data
6 months ago by Shred ▴ 990
3
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0
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465
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Answer: Answer: Figuring out if a gene exists in a genome
6 months ago by Shred ▴ 990
2
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1
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436
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Answer: Answer: Python pandas transforming int to float in gff subsetting
6 months ago by Shred ▴ 990
0
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0
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433
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Answer: Answer: How to count the number of multimapped reads from a bam file?
7 months ago by Shred ▴ 990
0
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0
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223
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Comment: Comment: Wildcards Snakemake using bedtools
7 months ago by Shred ▴ 990
1
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1
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893
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Comment: Comment: Running salmon in alignment mode?
7 months ago by Shred ▴ 990
0
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1
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474
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Comment: Comment: How to make predictions on genes not involved in a particular disease
7 months ago by Shred ▴ 990
0
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0
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453
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Comment: Comment: Which statistical test should be used for comparison of a single gene expression
8 months ago by Shred ▴ 990
0
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0
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498
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Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
8 months ago by Shred ▴ 990
0
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0
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419
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Comment: Comment: WGCNA functions not found
8 months ago by Shred ▴ 990
1
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1
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753
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Comment: Comment: For loop in R
8 months ago by Shred ▴ 990
0
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0
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454
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Comment: Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
8 months ago by Shred ▴ 990
169 results • Page 1 of 4
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