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155
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
9 days ago by Shred ▴ 790
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252
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Comment: Comment: Reading in input file into a Snakemake pipeline
9 days ago by Shred ▴ 790
3
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252
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Answer: Answer: Reading in input file into a Snakemake pipeline
10 days ago by Shred ▴ 790
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414
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Comment: Comment: Cannot call haplotypes on bam
11 days ago by Shred ▴ 790
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1
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228
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Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
12 days ago by Shred ▴ 790
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414
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Comment: Comment: Cannot call haplotypes on bam
12 days ago by Shred ▴ 790
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1
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414
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Comment: Comment: Cannot call haplotypes on bam
13 days ago by Shred ▴ 790
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398
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Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
28 days ago by Shred ▴ 790
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2
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398
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Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
29 days ago by Shred ▴ 790
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410
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Comment: Comment: Increased GC content after trimming RNAseq data
4 weeks ago by Shred ▴ 790
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334
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Answer: Answer: Figuring out if a gene exists in a genome
5 weeks ago by Shred ▴ 790
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1
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281
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Answer: Answer: Python pandas transforming int to float in gff subsetting
5 weeks ago by Shred ▴ 790
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259
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Answer: Answer: How to count the number of multimapped reads from a bam file?
7 weeks ago by Shred ▴ 790
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136
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Comment: Comment: Wildcards Snakemake using bedtools
7 weeks ago by Shred ▴ 790
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717
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Comment: Comment: Running salmon in alignment mode?
10 weeks ago by Shred ▴ 790
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1
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343
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Comment: Comment: How to make predictions on genes not involved in a particular disease
10 weeks ago by Shred ▴ 790
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327
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Comment: Comment: Which statistical test should be used for comparison of a single gene expression
3 months ago by Shred ▴ 790
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348
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Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
3 months ago by Shred ▴ 790
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280
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Comment: Comment: WGCNA functions not found
3 months ago by Shred ▴ 790
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576
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Comment: Comment: For loop in R
3 months ago by Shred ▴ 790
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337
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Comment: Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
3 months ago by Shred ▴ 790
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1
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337
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Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
3 months ago by Shred ▴ 790
2
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1
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482
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Answer: Answer: snakemake workflow
3 months ago by Shred ▴ 790
2
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0
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215
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Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
3 months ago by Shred ▴ 790
0
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0
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484
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Comment: Comment: Best transcriptome assembler
4 months ago by Shred ▴ 790
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1
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484
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Answer: Answer: Best transcriptome assembler
4 months ago by Shred ▴ 790
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1
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484
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Comment: Comment: Best transcriptome assembler
4 months ago by Shred ▴ 790
1
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0
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762
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
4 months ago by Shred ▴ 790
1
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1
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1.1k
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Comment: Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
5 months ago by Shred ▴ 790
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1
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374
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Comment: Comment: lncRNA analysis
5 months ago by Shred ▴ 790
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227
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Comment: Comment: why Mutect2 calls some germline variants as somatic ones?
5 months ago by Shred ▴ 790
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265
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Comment: Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
5 months ago by Shred ▴ 790
1
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0
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360
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Answer: Answer: How to change gene coordinate in gtf file?
5 months ago by Shred ▴ 790
1
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0
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312
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Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
5 months ago by Shred ▴ 790
0
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0
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792
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Comment: Comment: featureCounts parameters
5 months ago by Shred ▴ 790
0
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0
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792
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Comment: Comment: featureCounts parameters
5 months ago by Shred ▴ 790
1
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0
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1.1k
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Comment: Comment: Install required dependencies for GATK4 on remote server without root privilege
5 months ago by Shred ▴ 790
0
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1
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792
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Comment: Comment: featureCounts parameters
5 months ago by Shred ▴ 790
0
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2
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792
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Comment: Comment: featureCounts parameters
5 months ago by Shred ▴ 790
0
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1
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751
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Comment: Comment: How can I bring similar columns from two different tables side by side?
6 months ago by Shred ▴ 790
0
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0
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742
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Answer: Answer: Help with writing a loop for metaspades assembler (beginner)
6 months ago by Shred ▴ 790
1
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1
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1.6k
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Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
6 months ago by Shred ▴ 790
1
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1
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1.6k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
6 months ago by Shred ▴ 790
1
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0
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1.6k
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Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
6 months ago by Shred ▴ 790
0
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0
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531
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Answer: Answer: Converting A Long List of Ensembl IDs to Gene Symbols
6 months ago by Shred ▴ 790
1
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1
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287
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Answer: Answer: Extracting the mapped sequence of a certian gene
6 months ago by Shred ▴ 790
0
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0
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332
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Comment: Comment: Gene Enrichment
6 months ago by Shred ▴ 790
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0
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332
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Answer: Answer: Gene Enrichment
6 months ago by Shred ▴ 790
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0
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493
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
7 months ago by Shred ▴ 790
0
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1
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493
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
7 months ago by Shred ▴ 790
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