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2
votes
0
replies
350
views
Answer: Answer: How to extract all sequences mapped to a transcript from Kallisto output
5 weeks ago by Shred ▴ 460
0
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0
replies
149
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Comment: Comment: Error when opening CEL files in python
5 weeks ago by Shred ▴ 460
0
votes
1
reply
236
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Comment: Comment: Cutoff value for shrunken logFC
6 weeks ago by Shred ▴ 460
0
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1
reply
210
views
Comment: Comment: Interpreting read coverage over gene body plot
6 weeks ago by Shred ▴ 460
0
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0
replies
244
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Comment: Comment: Handle inflated log2FC while using interaction term in DESeq2
8 weeks ago by Shred ▴ 460
0
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3
replies
244
views
Handle inflated log2FC while using interaction term in DESeq2
RNAseq DESeq2 R
8 weeks ago by Shred ▴ 460
2
votes
0
replies
384
views
Answer: Answer: From amino acid sequence to DNA sequence using Reverse Translate software
8 weeks ago by Shred ▴ 460
1
vote
0
replies
613
views
Comment: Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
11 weeks ago by Shred ▴ 460
2
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1
reply
613
views
Answer: Answer: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
11 weeks ago by Shred ▴ 460
1
vote
0
replies
209
views
Tool: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
biomart annotation Ensembl
12 weeks ago by Shred ▴ 460
1
vote
0
replies
460
views
Comment: Comment: Single-End to reduce cost for Differential Expression Analysis ?
3 months ago by Shred ▴ 460
1
vote
0
replies
530
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Answer: Answer: understanding log2fold change of 0.31 and -0.25
3 months ago by Shred ▴ 460
2
votes
0
replies
161
views
Stringtie on non model organism - how to best proceed for DE analysis?
Salmon Stringtie DESeq transcriptome rna-seq
3 months ago by Shred ▴ 460
0
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1
reply
250
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Comment: Comment: CPM and FPKM for machine learning
3 months ago by Shred ▴ 460
0
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0
replies
405
views
Comment: Comment: Convert MSTRG gene IDs to real one?
4 months ago by Shred ▴ 460
0
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1
reply
405
views
Answer: Answer: Convert MSTRG gene IDs to real one?
4 months ago by Shred ▴ 460
2
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1
reply
242
views
Answer: Answer: HIV virus - GTF annonation
4 months ago by Shred ▴ 460
0
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0
replies
193
views
Answer: Answer: read ids along with transcript ids
updated 4 months ago by 90k • written 4 months ago by ▴ 460
0
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0
replies
103
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Assemble 3'mRNAseq with standard RNAseq
stringtie RNAseq assembly 3mRNAseq
5 months ago by Shred ▴ 460
1
vote
0
replies
517
views
Answer: Answer: How to grep every row for the every value of a column?
6 months ago by Shred ▴ 460
1
vote
2
replies
517
views
Comment: Comment: How to grep every row for the every value of a column?
6 months ago by Shred ▴ 460
1
vote
0
replies
234
views
Comment: C: module vs miniconda in HPC
7 months ago by Shred ▴ 460
1
vote
1
reply
367
views
Answer: A: How to install R in WinSCP server
7 months ago by Shred ▴ 460
3
votes
1
reply
367
views
Comment: C: How to install R in WinSCP server
7 months ago by Shred ▴ 460
3
votes
4
replies
794
views
Tool: Extend 3' UTR of a GTF file
RNA-Seq annotation GTF python Tool
updated 3 months ago by • 0 • written 12 months ago by ▴ 460
9
votes
11
replies
8.9k
views
8 follow
Faster way to get GC content and Coverage from .fasta
sequencing next-gen genome bash fasta
updated 10 months ago by ▴ 10 • written 3.6 years ago by ▴ 460
1
vote
0
replies
695
views
Comment: C: Pseudogenes in the human genome annotation
11 months ago by Shred ▴ 460
1
vote
1
reply
392
views
Answer: A: Biopython - AttributeError: when downloading from genbank
11 months ago by Shred ▴ 460
0
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0
replies
398
views
Comment: C: Find read distribution over every gene in RNA-seq
12 months ago by Shred ▴ 460
0
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1
reply
398
views
Comment: C: Find read distribution over every gene in RNA-seq
12 months ago by Shred ▴ 460
2
votes
4
replies
398
views
Find read distribution over every gene in RNA-seq
RNA-Seq python
updated 12 months ago by 90k • written 12 months ago by ▴ 460
0
votes
1
reply
679
views
Comment: C: How to get the output on multiple files into one file in sbatch script?
12 months ago by Shred ▴ 460
0
votes
1
reply
509
views
Comment: C: Difference in the counts generated using FeatureCounts and HTseq
12 months ago by Shred ▴ 460
0
votes
0
replies
398
views
Comment: C: How to remove fasta headers in a multifasta file and write file name as a fasta
12 months ago by Shred ▴ 460
2
votes
1
reply
398
views
Answer: A: How to remove fasta headers in a multifasta file and write file name as a fasta
12 months ago by Shred ▴ 460
0
votes
1
reply
794
views
Comment: C: Extend 3' UTR of a GTF file
12 months ago by Shred ▴ 460
1
vote
0
replies
453
views
Comment: C: How to retrieve sequences of genes list at a time from a fasta file
13 months ago by Shred ▴ 460
0
votes
0
replies
474
views
Comment: C: Tips for Reading genotype files into python
13 months ago by Shred ▴ 460
0
votes
0
replies
474
views
Comment: C: Tips for Reading genotype files into python
13 months ago by Shred ▴ 460
0
votes
1
reply
474
views
Comment: C: Tips for Reading genotype files into python
13 months ago by Shred ▴ 460
1
vote
1
reply
459
views
Comment: C: How much the sorting order of a gff file matters?
13 months ago by Shred ▴ 460
0
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1
reply
459
views
Comment: C: How much the sorting order of a gff file matters?
13 months ago by Shred ▴ 460
4
votes
7
replies
459
views
How much the sorting order of a gff file matters?
gff RNA-Seq annotation
updated 13 months ago by ★ 6.3k • written 13 months ago by ▴ 460
0
votes
2
replies
2.4k
views
Comment: C: Avoid download limit from NCBI entrez with Biopython using API key
2.7 years ago by Shred ▴ 460
0
votes
1
reply
3.7k
views
Comment: C: Remove duplicates in an extremely large text file
2.7 years ago by Shred ▴ 460
0
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1
reply
3.7k
views
Comment: C: Remove duplicates in an extremely large text file
2.7 years ago by Shred ▴ 460
2
votes
2
replies
3.7k
views
Answer: A: Remove duplicates in an extremely large text file
2.7 years ago by Shred ▴ 460
0
votes
0
replies
2.4k
views
Comment: C: Avoid download limit from NCBI entrez with Biopython using API key
2.7 years ago by Shred ▴ 460
2
votes
10
replies
2.4k
views
Avoid download limit from NCBI entrez with Biopython using API key
biopython ncbi entrez
2.7 years ago by Shred ▴ 460
0
votes
1
reply
2.4k
views
Comment: C: Avoid download limit from NCBI entrez with Biopython using API key
2.7 years ago by Shred ▴ 460
88 results • Page 1 of 2
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