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Answer: Answer: Help with Base quality Score Recalibration (BQSR) using GATK
3 days ago by Shred ★ 1.4k
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375
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Answer: Answer: Pearson correlation between Gene and clinical parameters
5 weeks ago by Shred ★ 1.4k
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0
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238
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Answer: Answer: Searching for a specific somatic mutation in Illumina data
3 months ago by Shred ★ 1.4k
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0
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268
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Answer: Answer: Statistical analysisi in DESeq2 with different condition
3 months ago by Shred ★ 1.4k
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1
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485
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Answer: Answer: RNA-seq deconvolution algorithm that takes into account weight of marker gene
3 months ago by Shred ★ 1.4k
2
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1
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374
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Answer: Answer: Proper HTSeq usage on bacterial genome. Don't quite understand --t
6 months ago by Shred ★ 1.4k
4
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1
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493
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Answer: Answer: Where to find info on VCF file format?
7 months ago by Shred ★ 1.4k
2
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0
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635
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Answer: Answer: Retrieving Chromosome Accession for Specific Gene Using Ensembl REST API
8 months ago by Shred ★ 1.4k
2
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1
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679
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Answer: Answer: Keplen Meyer Curve Dropping to zero
8 months ago by Shred ★ 1.4k
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639
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Answer: Answer: GATK not working when clone to VM
9 months ago by Shred ★ 1.4k
3
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1
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617
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Answer: Answer: Develop model based on differentially expressed genes
9 months ago by Shred ★ 1.4k
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613
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Answer: Answer: Lollipop plots for structural variation coordinates
9 months ago by Shred ★ 1.4k
2
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2
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894
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Answer: Answer: Inquiry Regarding Somatic Analysis and Normal Sample Requirement
11 months ago by Shred ★ 1.4k
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851
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Answer: Answer: How to get the gene ID
11 months ago by Shred ★ 1.4k
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479
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Answer: Answer: python script revision for sequencing depth
11 months ago by Shred ★ 1.4k
1
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0
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591
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Answer: Answer: heatmap color key
12 months ago by Shred ★ 1.4k
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1
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1.7k
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Answer: Answer: How to calculate the coverage of list of genes in whole exome data
12 months ago by Shred ★ 1.4k
2
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0
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1.5k
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Answer: Answer: Allele Frequency >0.5 for cancer somatic mutations?
12 months ago by Shred ★ 1.4k
4
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1
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1.3k
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Answer: Answer: Snakemake workflow for trimmomatic
13 months ago by Shred ★ 1.4k
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1
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736
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Answer: Answer: API REST ALINGMENT
13 months ago by Shred ★ 1.4k
1
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0
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684
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Answer: Answer: RNAseq matrix containing zero values
14 months ago by Shred ★ 1.4k
2
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1
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1.5k
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Answer: Answer: Snakemake Target rules may not contain wildcards.
16 months ago by Shred ★ 1.4k
0
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0
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794
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Answer: Answer: Change column order in vcf file
16 months ago by Shred ★ 1.4k
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1
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852
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Answer: Answer: What is the best time saving way to loop over column elements in pandas DF and r
17 months ago by Shred ★ 1.4k
2
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1
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501
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Answer: Answer: Get a vector of 0 and 1 using codon positions
17 months ago by Shred ★ 1.4k
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0
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430
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Answer: Answer: Match keys in json file with csv files
17 months ago by Shred ★ 1.4k
2
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1
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2.1k
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Answer: Answer: Upset plot using python
17 months ago by Shred ★ 1.4k
2
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1
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681
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Answer: Answer: Clean data with pandas
18 months ago by Shred ★ 1.4k
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1
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1.7k
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Answer: Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
18 months ago by Shred ★ 1.4k
2
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0
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1.3k
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Answer: Answer: Get both somatic and germline mutations from tumor only sample?
20 months ago by Shred ★ 1.4k
1
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1
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619
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Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
20 months ago by Shred ★ 1.4k
2
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0
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733
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
20 months ago by Shred ★ 1.4k
3
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1
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958
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Answer: Answer: Reading in input file into a Snakemake pipeline
20 months ago by Shred ★ 1.4k
1
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2
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945
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Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
21 months ago by Shred ★ 1.4k
3
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0
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794
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Answer: Answer: Figuring out if a gene exists in a genome
21 months ago by Shred ★ 1.4k
2
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1
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811
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Answer: Answer: Python pandas transforming int to float in gff subsetting
21 months ago by Shred ★ 1.4k
0
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0
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1.0k
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Answer: Answer: How to count the number of multimapped reads from a bam file?
22 months ago by Shred ★ 1.4k
0
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0
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1.3k
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Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
23 months ago by Shred ★ 1.4k
0
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1
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846
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Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
23 months ago by Shred ★ 1.4k
2
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1
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1.6k
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Answer: Answer: snakemake workflow
23 months ago by Shred ★ 1.4k
2
votes
0
replies
641
views
Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
24 months ago by Shred ★ 1.4k
1
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1
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1.3k
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Answer: Answer: Best transcriptome assembler
2.1 years ago by Shred ★ 1.4k
1
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0
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910
views
Answer: Answer: How to change gene coordinate in gtf file?
2.2 years ago by Shred ★ 1.4k
1
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0
replies
705
views
Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
2.2 years ago by Shred ★ 1.4k
0
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0
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1.8k
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Answer: Answer: Help with writing a loop for metaspades assembler (beginner)
2.2 years ago by Shred ★ 1.4k
1
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0
replies
4.2k
views
Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
2.2 years ago by Shred ★ 1.4k
0
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0
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1.6k
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Answer: Answer: Converting A Long List of Ensembl IDs to Gene Symbols
2.2 years ago by Shred ★ 1.4k
1
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1
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568
views
Answer: Answer: Extracting the mapped sequence of a certian gene
2.2 years ago by Shred ★ 1.4k
0
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0
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898
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Answer: Answer: Gene Enrichment
2.3 years ago by Shred ★ 1.4k
0
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1
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2.3k
views
Answer: Answer: Can't convert dog ensembl IDs into gene names
2.3 years ago by Shred ★ 1.4k
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