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Answer: Answer: API REST ALINGMENT
4 hours ago by Shred ★ 1.0k
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330
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Answer: Answer: RNAseq matrix containing zero values
29 days ago by Shred ★ 1.0k
2
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1
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512
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Answer: Answer: Snakemake Target rules may not contain wildcards.
3 months ago by Shred ★ 1.0k
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218
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Answer: Answer: Change column order in vcf file
3 months ago by Shred ★ 1.0k
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1
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520
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Answer: Answer: What is the best time saving way to loop over column elements in pandas DF and r
4 months ago by Shred ★ 1.0k
2
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1
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259
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Answer: Answer: Get a vector of 0 and 1 using codon positions
4 months ago by Shred ★ 1.0k
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226
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Answer: Answer: Match keys in json file with csv files
4 months ago by Shred ★ 1.0k
2
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1
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748
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Answer: Answer: Upset plot using python
4 months ago by Shred ★ 1.0k
2
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1
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366
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Answer: Answer: Clean data with pandas
4 months ago by Shred ★ 1.0k
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1
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805
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Answer: Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
5 months ago by Shred ★ 1.0k
2
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0
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489
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Answer: Answer: Get both somatic and germline mutations from tumor only sample?
6 months ago by Shred ★ 1.0k
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399
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Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
6 months ago by Shred ★ 1.0k
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369
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
7 months ago by Shred ★ 1.0k
3
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1
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534
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Answer: Answer: Reading in input file into a Snakemake pipeline
7 months ago by Shred ★ 1.0k
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2
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630
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Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
8 months ago by Shred ★ 1.0k
3
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0
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513
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Answer: Answer: Figuring out if a gene exists in a genome
8 months ago by Shred ★ 1.0k
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1
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481
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Answer: Answer: Python pandas transforming int to float in gff subsetting
8 months ago by Shred ★ 1.0k
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0
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569
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Answer: Answer: How to count the number of multimapped reads from a bam file?
8 months ago by Shred ★ 1.0k
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611
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Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
10 months ago by Shred ★ 1.0k
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1
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515
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Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
10 months ago by Shred ★ 1.0k
2
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1
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814
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Answer: Answer: snakemake workflow
10 months ago by Shred ★ 1.0k
2
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0
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340
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Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
10 months ago by Shred ★ 1.0k
1
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1
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722
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Answer: Answer: Best transcriptome assembler
11 months ago by Shred ★ 1.0k
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0
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540
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Answer: Answer: How to change gene coordinate in gtf file?
12 months ago by Shred ★ 1.0k
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0
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449
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Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
12 months ago by Shred ★ 1.0k
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1.1k
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Answer: Answer: Help with writing a loop for metaspades assembler (beginner)
13 months ago by Shred ★ 1.0k
1
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0
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2.5k
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Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
13 months ago by Shred ★ 1.0k
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0
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776
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Answer: Answer: Converting A Long List of Ensembl IDs to Gene Symbols
13 months ago by Shred ★ 1.0k
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1
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366
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Answer: Answer: Extracting the mapped sequence of a certian gene
13 months ago by Shred ★ 1.0k
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0
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514
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Answer: Answer: Gene Enrichment
14 months ago by Shred ★ 1.0k
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1
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1.4k
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Answer: Answer: Can't convert dog ensembl IDs into gene names
15 months ago by Shred ★ 1.0k
2
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0
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874
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Answer: Answer: How to extract all sequences mapped to a transcript from Kallisto output
18 months ago by Shred ★ 1.0k
2
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0
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2.2k
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Answer: Answer: From amino acid sequence to DNA sequence using Reverse Translate software
19 months ago by Shred ★ 1.0k
2
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1
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2.5k
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Answer: Answer: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
20 months ago by Shred ★ 1.0k
1
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0
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1.9k
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Answer: Answer: understanding log2fold change of 0.31 and -0.25
20 months ago by Shred ★ 1.0k
0
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1
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1.5k
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Answer: Answer: Convert MSTRG gene IDs to real one?
21 months ago by Shred ★ 1.0k
2
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1
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779
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Answer: Answer: HIV virus - GTF annonation
21 months ago by Shred ★ 1.0k
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0
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547
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Answer: Answer: read ids along with transcript ids
updated 21 months ago by 97k • written 21 months ago by ★ 1.0k
1
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0
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842
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Answer: Answer: How to grep every row for the every value of a column?
24 months ago by Shred ★ 1.0k
1
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1
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972
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Answer: A: How to install R in WinSCP server
2.1 years ago by Shred ★ 1.0k
1
vote
1
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719
views
Answer: A: Biopython - AttributeError: when downloading from genbank
2.4 years ago by Shred ★ 1.0k
2
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1
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1.1k
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Answer: A: How to remove fasta headers in a multifasta file and write file name as a fasta
2.4 years ago by Shred ★ 1.0k
2
votes
2
replies
5.5k
views
Answer: A: Remove duplicates in an extremely large text file
4.1 years ago by Shred ★ 1.0k
1
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1
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1.5k
views
Answer: A: GenBank features don't extract sequences based on condition Biopython
4.2 years ago by Shred ★ 1.0k
0
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0
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1.2k
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Answer: A: Get taxonomy into a CDS from genomic custom database
4.8 years ago by Shred ★ 1.0k
3
votes
0
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875
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Answer: A: Perl script required
4.8 years ago by Shred ★ 1.0k
0
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0
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2.1k
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Answer: A: How can i summary my batch blast result to check the species distribution within
5.0 years ago by Shred ★ 1.0k
3
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1
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1.2k
views
Answer: A: How can I find the same record in two file? Use python
updated 5.0 years ago by 47k • written 5.0 years ago by ★ 1.0k
3
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1
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14k
views
Answer: Answer: Faster way to get GC content and Coverage from .fasta
14 months ago by Shred ★ 1.0k
0
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1
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1.0k
views
Answer: A: updating a cell in a file
5.1 years ago by Shred ★ 1.0k
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