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Answer: Answer: RNA-Seq mutation calling without germline data
9 weeks ago by Shred ★ 1.5k
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1
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516
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Answer: Answer: CIBERSORTX disable quantile normalization
10 weeks ago by Shred ★ 1.5k
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1
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518
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Answer: Answer: RNA-seq anlaysis > coding region vs. non coding region
updated 4 months ago by 44k • written 4 months ago by ★ 1.5k
1
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1
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553
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Answer: Answer: input for gatk VariantAnnotator --dbsnp
4 months ago by Shred ★ 1.5k
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0
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402
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Answer: Answer: RNA-seq, TMM and rRNA counts. Should rRNA genes be removed prior to DE analysis?
4 months ago by Shred ★ 1.5k
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1
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404
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Answer: Answer: Help with Base quality Score Recalibration (BQSR) using GATK
7 months ago by Shred ★ 1.5k
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1
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623
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Answer: Answer: Pearson correlation between Gene and clinical parameters
8 months ago by Shred ★ 1.5k
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0
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375
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Answer: Answer: Searching for a specific somatic mutation in Illumina data
10 months ago by Shred ★ 1.5k
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0
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403
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Answer: Answer: Statistical analysisi in DESeq2 with different condition
10 months ago by Shred ★ 1.5k
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1
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728
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Answer: Answer: RNA-seq deconvolution algorithm that takes into account weight of marker gene
10 months ago by Shred ★ 1.5k
2
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1
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554
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Answer: Answer: Proper HTSeq usage on bacterial genome. Don't quite understand --t
13 months ago by Shred ★ 1.5k
4
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1
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747
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Answer: Answer: Where to find info on VCF file format?
14 months ago by Shred ★ 1.5k
2
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0
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845
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Answer: Answer: Retrieving Chromosome Accession for Specific Gene Using Ensembl REST API
15 months ago by Shred ★ 1.5k
2
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1
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935
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Answer: Answer: Keplen Meyer Curve Dropping to zero
16 months ago by Shred ★ 1.5k
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0
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846
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Answer: Answer: GATK not working when clone to VM
16 months ago by Shred ★ 1.5k
3
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1
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793
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Answer: Answer: Develop model based on differentially expressed genes
16 months ago by Shred ★ 1.5k
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0
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853
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Answer: Answer: Lollipop plots for structural variation coordinates
17 months ago by Shred ★ 1.5k
2
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2
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1.2k
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Answer: Answer: Inquiry Regarding Somatic Analysis and Normal Sample Requirement
18 months ago by Shred ★ 1.5k
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1
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1.1k
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Answer: Answer: How to get the gene ID
18 months ago by Shred ★ 1.5k
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0
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620
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Answer: Answer: python script revision for sequencing depth
19 months ago by Shred ★ 1.5k
1
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0
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768
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Answer: Answer: heatmap color key
19 months ago by Shred ★ 1.5k
1
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1
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2.3k
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Answer: Answer: How to calculate the coverage of list of genes in whole exome data
19 months ago by Shred ★ 1.5k
2
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0
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2.0k
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Answer: Answer: Allele Frequency >0.5 for cancer somatic mutations?
19 months ago by Shred ★ 1.5k
4
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1
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1.6k
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Answer: Answer: Snakemake workflow for trimmomatic
20 months ago by Shred ★ 1.5k
1
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1
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956
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Answer: Answer: API REST ALINGMENT
20 months ago by Shred ★ 1.5k
1
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0
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841
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Answer: Answer: RNAseq matrix containing zero values
21 months ago by Shred ★ 1.5k
2
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1
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1.9k
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Answer: Answer: Snakemake Target rules may not contain wildcards.
24 months ago by Shred ★ 1.5k
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0
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1.0k
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Answer: Answer: Change column order in vcf file
24 months ago by Shred ★ 1.5k
0
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1
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1.0k
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Answer: Answer: What is the best time saving way to loop over column elements in pandas DF and r
2.0 years ago by Shred ★ 1.5k
2
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1
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642
views
Answer: Answer: Get a vector of 0 and 1 using codon positions
2.1 years ago by Shred ★ 1.5k
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0
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575
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Answer: Answer: Match keys in json file with csv files
2.1 years ago by Shred ★ 1.5k
2
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1
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2.5k
views
Answer: Answer: Upset plot using python
2.1 years ago by Shred ★ 1.5k
2
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1
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849
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Answer: Answer: Clean data with pandas
2.1 years ago by Shred ★ 1.5k
0
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1
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2.0k
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Answer: Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
2.2 years ago by Shred ★ 1.5k
2
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0
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1.7k
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Answer: Answer: Get both somatic and germline mutations from tumor only sample?
2.3 years ago by Shred ★ 1.5k
1
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1
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768
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Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
2.3 years ago by Shred ★ 1.5k
2
votes
0
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931
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
2.3 years ago by Shred ★ 1.5k
3
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1
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1.2k
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Answer: Answer: Reading in input file into a Snakemake pipeline
2.3 years ago by Shred ★ 1.5k
1
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2
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1.1k
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Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
2.4 years ago by Shred ★ 1.5k
3
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0
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1.0k
views
Answer: Answer: Figuring out if a gene exists in a genome
2.4 years ago by Shred ★ 1.5k
2
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1
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989
views
Answer: Answer: Python pandas transforming int to float in gff subsetting
2.4 years ago by Shred ★ 1.5k
0
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0
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1.2k
views
Answer: Answer: How to count the number of multimapped reads from a bam file?
2.4 years ago by Shred ★ 1.5k
0
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0
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1.7k
views
Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
2.5 years ago by Shred ★ 1.5k
0
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1
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1.0k
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Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
2.6 years ago by Shred ★ 1.5k
2
votes
1
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1.9k
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Answer: Answer: snakemake workflow
2.6 years ago by Shred ★ 1.5k
2
votes
0
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788
views
Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
2.6 years ago by Shred ★ 1.5k
1
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1
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1.7k
views
Answer: Answer: Best transcriptome assembler
2.7 years ago by Shred ★ 1.5k
1
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0
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1.1k
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Answer: Answer: How to change gene coordinate in gtf file?
2.8 years ago by Shred ★ 1.5k
1
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0
replies
845
views
Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
2.8 years ago by Shred ★ 1.5k
0
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0
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2.0k
views
Answer: Answer: Help with writing a loop for metaspades assembler (beginner)
2.8 years ago by Shred ★ 1.5k
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