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Answer: Answer: Read depth for RNA-seq based Variant Calling
19 days ago by Shred ★ 1.6k
2
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2
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2.5k
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Answer: Answer: New Macbook M4 laptops (Pro vs Max)
11 weeks ago by Shred ★ 1.6k
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1.7k
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Answer: Answer: RNA-Seq mutation calling without germline data
5 months ago by Shred ★ 1.6k
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1
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765
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Answer: Answer: CIBERSORTX disable quantile normalization
6 months ago by Shred ★ 1.6k
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1
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751
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Answer: Answer: RNA-seq anlaysis > coding region vs. non coding region
updated 7 months ago by 45k • written 7 months ago by ★ 1.6k
1
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873
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Answer: Answer: input for gatk VariantAnnotator --dbsnp
8 months ago by Shred ★ 1.6k
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512
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Answer: Answer: RNA-seq, TMM and rRNA counts. Should rRNA genes be removed prior to DE analysis?
8 months ago by Shred ★ 1.6k
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1
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544
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Answer: Answer: Help with Base quality Score Recalibration (BQSR) using GATK
10 months ago by Shred ★ 1.6k
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1
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806
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Answer: Answer: Pearson correlation between Gene and clinical parameters
12 months ago by Shred ★ 1.6k
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0
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487
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Answer: Answer: Searching for a specific somatic mutation in Illumina data
14 months ago by Shred ★ 1.6k
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0
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511
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Answer: Answer: Statistical analysisi in DESeq2 with different condition
14 months ago by Shred ★ 1.6k
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1
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967
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Answer: Answer: RNA-seq deconvolution algorithm that takes into account weight of marker gene
14 months ago by Shred ★ 1.6k
2
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1
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725
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Answer: Answer: Proper HTSeq usage on bacterial genome. Don't quite understand --t
17 months ago by Shred ★ 1.6k
4
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1
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921
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Answer: Answer: Where to find info on VCF file format?
17 months ago by Shred ★ 1.6k
2
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0
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1.0k
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Answer: Answer: Retrieving Chromosome Accession for Specific Gene Using Ensembl REST API
19 months ago by Shred ★ 1.6k
2
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1
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1.2k
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Answer: Answer: Keplen Meyer Curve Dropping to zero
19 months ago by Shred ★ 1.6k
0
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0
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986
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Answer: Answer: GATK not working when clone to VM
20 months ago by Shred ★ 1.6k
3
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1
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955
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Answer: Answer: Develop model based on differentially expressed genes
20 months ago by Shred ★ 1.6k
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0
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1.0k
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Answer: Answer: Lollipop plots for structural variation coordinates
20 months ago by Shred ★ 1.6k
2
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2
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1.4k
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Answer: Answer: Inquiry Regarding Somatic Analysis and Normal Sample Requirement
22 months ago by Shred ★ 1.6k
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1
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1.4k
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Answer: Answer: How to get the gene ID
22 months ago by Shred ★ 1.6k
0
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0
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730
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Answer: Answer: python script revision for sequencing depth
22 months ago by Shred ★ 1.6k
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0
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892
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Answer: Answer: heatmap color key
23 months ago by Shred ★ 1.6k
1
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1
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2.7k
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Answer: Answer: How to calculate the coverage of list of genes in whole exome data
23 months ago by Shred ★ 1.6k
2
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0
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2.4k
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Answer: Answer: Allele Frequency >0.5 for cancer somatic mutations?
23 months ago by Shred ★ 1.6k
4
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1
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1.8k
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Answer: Answer: Snakemake workflow for trimmomatic
23 months ago by Shred ★ 1.6k
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1
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1.1k
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Answer: Answer: API REST ALINGMENT
24 months ago by Shred ★ 1.6k
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0
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1.0k
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Answer: Answer: RNAseq matrix containing zero values
2.1 years ago by Shred ★ 1.6k
2
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1
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2.1k
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Answer: Answer: Snakemake Target rules may not contain wildcards.
2.3 years ago by Shred ★ 1.6k
0
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0
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1.2k
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Answer: Answer: Change column order in vcf file
2.3 years ago by Shred ★ 1.6k
0
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1
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1.2k
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Answer: Answer: What is the best time saving way to loop over column elements in pandas DF and r
2.3 years ago by Shred ★ 1.6k
2
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1
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775
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Answer: Answer: Get a vector of 0 and 1 using codon positions
2.3 years ago by Shred ★ 1.6k
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0
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668
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Answer: Answer: Match keys in json file with csv files
2.4 years ago by Shred ★ 1.6k
2
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1
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2.8k
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Answer: Answer: Upset plot using python
2.4 years ago by Shred ★ 1.6k
2
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1
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992
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Answer: Answer: Clean data with pandas
2.4 years ago by Shred ★ 1.6k
0
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1
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2.4k
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Answer: Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
2.4 years ago by Shred ★ 1.6k
2
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0
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1.9k
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Answer: Answer: Get both somatic and germline mutations from tumor only sample?
2.5 years ago by Shred ★ 1.6k
1
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1
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882
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Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
2.5 years ago by Shred ★ 1.6k
2
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0
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1.1k
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
2.6 years ago by Shred ★ 1.6k
3
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1
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1.4k
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Answer: Answer: Reading in input file into a Snakemake pipeline
2.6 years ago by Shred ★ 1.6k
1
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2
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1.3k
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Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
2.7 years ago by Shred ★ 1.6k
3
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0
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1.2k
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Answer: Answer: Figuring out if a gene exists in a genome
2.7 years ago by Shred ★ 1.6k
2
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1
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1.1k
views
Answer: Answer: Python pandas transforming int to float in gff subsetting
2.7 years ago by Shred ★ 1.6k
0
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0
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1.4k
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Answer: Answer: How to count the number of multimapped reads from a bam file?
2.7 years ago by Shred ★ 1.6k
0
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0
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1.8k
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Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
2.8 years ago by Shred ★ 1.6k
0
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1
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1.2k
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Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
2.9 years ago by Shred ★ 1.6k
2
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1
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2.1k
views
Answer: Answer: snakemake workflow
2.9 years ago by Shred ★ 1.6k
2
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0
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897
views
Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
2.9 years ago by Shred ★ 1.6k
1
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1
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2.0k
views
Answer: Answer: Best transcriptome assembler
2.9 years ago by Shred ★ 1.6k
1
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0
replies
1.2k
views
Answer: Answer: How to change gene coordinate in gtf file?
3.0 years ago by Shred ★ 1.6k
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