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0
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0
replies
8.8k
views
Answer:
Answer: randomly shuffle BAM file
updated 18 months ago by
Ram
43k • written 8.8 years ago by
Ian
6.0k
0
votes
0
replies
1.9k
views
Answer:
Answer: Chip-Chip peaks calling
updated 18 months ago by
Ram
43k • written 8.8 years ago by
Ian
6.0k
1
vote
1
reply
5.1k
views
Answer:
Answer: How to extract peak coordinates for chip-seq bedgraph file ?
updated 18 months ago by
Ram
43k • written 8.8 years ago by
Ian
6.0k
0
votes
0
replies
2.9k
views
Comment:
Comment: Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
updated 17 months ago by
Ram
43k • written 8.8 years ago by
Ian
6.0k
0
votes
1
reply
1.7k
views
Comment:
Comment: Peak calling on FastX-collapser processed data
updated 16 months ago by
Ram
43k • written 8.9 years ago by
Ian
6.0k
0
votes
1
reply
1.7k
views
Answer:
Answer: Peak calling on FastX-collapser processed data
updated 16 months ago by
Ram
43k • written 8.9 years ago by
Ian
6.0k
0
votes
1
reply
6.7k
views
Answer:
Answer: Paired bowtie2: 91% overall alignment but 0.01% concordant - should I be worried
updated 16 months ago by
Ram
43k • written 9.0 years ago by
Ian
6.0k
4
votes
0
replies
3.6k
views
Answer:
Answer: How to add gene annotation to a UCSC assembly hub?
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Ian
6.0k
8
votes
1
reply
3.6k
views
How to add gene annotation to a UCSC assembly hub?
assembly
hub
gtf
gff3
UCSC
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Ian
6.0k
1
vote
0
replies
8.6k
views
Answer:
Answer: color a sequence alignment
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Ian
6.0k
0
votes
1
reply
7.4k
views
Answer:
Answer: Top MACS peaks from ChIP-seq look identical to input
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Ian
6.0k
0
votes
0
replies
2.2k
views
Answer:
Answer: how to peak caling the abnormal chipseq bam files against the input
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Ian
6.0k
3
votes
5
replies
4.6k
views
htseq-count problem with --samout option
htseq-count
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
0
replies
2.6k
views
Comment:
Comment: Galaxy and ProFTP
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Ian
6.0k
1
vote
1
reply
2.6k
views
Answer:
Answer: Galaxy and ProFTP
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Ian
6.0k
0
votes
0
replies
4.6k
views
Comment:
Comment: htseq-count problem with --samout option
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
2
replies
4.6k
views
Comment:
Comment: htseq-count problem with --samout option
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
1
reply
10k
views
Comment:
C: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
9.3 years ago by
Ian
6.0k
0
votes
1
reply
10k
views
Answer:
Answer: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
0
replies
9.7k
views
Comment:
Comment: How do I view the height / distribution of ChIP-seq peaks?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
1
vote
0
replies
9.7k
views
Answer:
Answer: How do I view the height / distribution of ChIP-seq peaks?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
1
vote
0
replies
3.7k
views
Answer:
Answer: Chipseq data with Mock, Input And IP
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
0
replies
2.9k
views
Comment:
C: Where are the different RAM versions of IGB in v8.3.0
9.3 years ago by
Ian
6.0k
0
votes
0
replies
2.9k
views
Comment:
Comment: Where are the different RAM versions of IGB in v8.3.0
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
0
replies
35k
views
Comment:
Comment: Remove mitochondrial reads from BAM files
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
12
votes
1
reply
35k
views
Answer:
Answer: Remove mitochondrial reads from BAM files
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
2
votes
0
replies
2.9k
views
Answer:
Answer: Where are the different RAM versions of IGB in v8.3.0
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
1
reply
2.3k
views
Answer:
Answer: grab signal from wig to bed file
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
0
replies
3.4k
views
Comment:
Comment: Using MEME-chip for motif discovery in sequences not derived from Chip-seq?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
1
reply
3.4k
views
Answer:
Answer: Using MEME-chip for motif discovery in sequences not derived from Chip-seq?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
1
reply
3.1k
views
Comment:
Comment: Computational requirement to host a genome browser
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
1
vote
1
reply
3.1k
views
Answer:
Answer: Computational requirement to host a genome browser
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
0
votes
1
reply
3.4k
views
Comment:
Comment: How can I create a more accurate PWM?
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Ian
6.0k
2
votes
0
replies
52k
views
Answer:
Answer: Venn/Euler Diagram Of Four Or More Sets
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
4
votes
3
replies
8.8k
views
Regular expression matching with Python and biopython SeqIO
regular-expression
python
biopython
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
0
votes
0
replies
8.8k
views
Comment:
Comment: Regular expression matching with Python and biopython SeqIO
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
0
votes
0
replies
2.8k
views
Answer:
Answer: How does MACS handle read density normalization?
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
0
votes
0
replies
11k
views
Comment:
Comment: Comparing two ChIP-seq libraries
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
0
votes
0
replies
9.1k
views
Comment:
C: Association between bed files - statistical significance
9.5 years ago by
Ian
6.0k
0
votes
1
reply
11k
views
Comment:
Comment: Comparing two ChIP-seq libraries
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
0
votes
0
replies
15k
views
Answer:
Answer: Identify gene symbols given a list of chromosome positions
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
0
votes
1
reply
9.1k
views
Comment:
C: Association between bed files - statistical significance
9.5 years ago by
Ian
6.0k
2
votes
1
reply
11k
views
Answer:
Answer: Comparing two ChIP-seq libraries
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
0
votes
0
replies
2.7k
views
Answer:
Answer: Chip-seq common control for two treatments
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Ian
6.0k
10
votes
0
replies
27k
views
Answer:
Answer: the difference between BED files and BedGraph files
updated 2.4 years ago by
Ram
43k • written 9.6 years ago by
Ian
6.0k
0
votes
0
replies
5.7k
views
Answer:
Answer: how to install macs and use it
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
Ian
6.0k
1
vote
0
replies
7.8k
views
Comment:
Comment: virtualenv - running Python based software in isolation
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
Ian
6.0k
0
votes
1
reply
3.7k
views
Answer:
Answer: Is correct finding unique reads with the flag -F 0x104?
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
Ian
6.0k
0
votes
0
replies
63k
views
Comment:
C: Convert SAM to BAM
9.8 years ago by
Ian
6.0k
3
votes
1
reply
63k
views
Answer:
A: Convert SAM to BAM
9.8 years ago by
Ian
6.0k
453 results • Page
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