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0
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338
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Comment: Comment: Are there mm39/GRCm39 blacklist regions?
6 weeks ago by Ian 5.8k
0
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0
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338
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Comment: Comment: Are there mm39/GRCm39 blacklist regions?
6 weeks ago by Ian 5.8k
6
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4
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338
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Are there mm39/GRCm39 blacklist regions?
blacklist
6 weeks ago by Ian 5.8k
0
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1
reply
443
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Comment: Comment: How to count mapping rates for ChIP-seq?
7 weeks ago by Ian 5.8k
0
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0
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3.4k
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Answer: Answer: How to use output from GeneMark-ES to identify function?
7 months ago by Ian 5.8k
1
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0
replies
341
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How to convert a HG19 Hi-C hic file to HG38?
Hi-C hic
12 months ago by Ian 5.8k
1
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1
reply
404
views
Custom genome installation in SigProfileMatrixGenerator
genome custom SigProfilerMatrixGenerator
13 months ago by Ian 5.8k
1
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0
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404
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Answer: Answer: Custom genome installation in SigProfileMatrixGenerator
13 months ago by Ian 5.8k
1
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3
replies
704
views
Tool/method to calculate the sequence context of variants?
sequence context variant
14 months ago by Ian 5.8k
1
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0
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704
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Answer: Answer: Tool/method to calculate the sequence context of variants?
14 months ago by Ian 5.8k
0
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0
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704
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Comment: Comment: Tool/method to calculate the sequence context of variants?
14 months ago by Ian 5.8k
3
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3
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1.1k
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Comparing input read subtracted ChIP-read profiles using Deeptools v3.4.3
deeptools
21 months ago by Ian 5.8k
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1
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1.1k
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Comment: C: Comparing input read subtracted ChIP-read profiles using Deeptools2
21 months ago by Ian 5.8k
8
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2
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5.7k
views
Bedtools Intersectbed
bedtools intersect coverage coverage
updated 21 months ago by 20 • written 10.6 years ago by 5.8k
7
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0
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43k
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Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 2.1 years ago by 36k • written 11.2 years ago by 5.8k
1
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0
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43k
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Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 2.1 years ago by 36k • written 11.2 years ago by 5.8k
2
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1
reply
6.7k
views
Tool: Weeder 2.0 - motif discovery tool updated
chip-seq weeder Tool discovery motif
updated 5 months ago by 36k • written 7.7 years ago by 5.8k
4
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0
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3.8k
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Answer: A: MACS2 Peak Calling : Different number of peaks for each replicate
updated 2.5 years ago by 36k • written 6.4 years ago by 5.8k
0
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0
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4.4k
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Answer: A: DiffBind - DESeq2 Consensus peakset
updated 2.5 years ago by 36k • written 8.1 years ago by 5.8k
0
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0
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4.3k
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Answer: A: how to calculate distance between CpG site and TSS?
updated 2.5 years ago by 36k • written 8.1 years ago by 5.8k
0
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1
reply
19k
views
Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 2.5 years ago by 36k • written 8.2 years ago by 5.8k
1
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0
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7.3k
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Answer: A: Read depth and Hi-C resolution
updated 2.5 years ago by 36k • written 6.5 years ago by 5.8k
0
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1
reply
8.2k
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Answer: A: Difference between UCSC and Ensembl genomes
updated 2.5 years ago by 36k • written 6.5 years ago by 5.8k
0
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0
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19k
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Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 2.5 years ago by 36k • written 8.2 years ago by 5.8k
2
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1
reply
717
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Answer: A: found non conserved regions between 2 genomes
2.6 years ago by Ian 5.8k
2
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0
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2.7k
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Answer: A: Program For Filtering Solid Reads
updated 2.6 years ago by 36k • written 9.2 years ago by 5.8k
0
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1
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16k
views
Answer: A: Error when trying to use samtools to convert a sam files to a bam file
updated 2.6 years ago by 36k • written 6.6 years ago by 5.8k
0
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0
replies
5.4k
views
Answer: A: Doubts related to MACS tool
updated 2.6 years ago by 36k • written 6.6 years ago by 5.8k
1
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0
replies
3.1k
views
Answer: A: High Kmer Content in middle of the read
updated 2.6 years ago by 36k • written 6.6 years ago by 5.8k
0
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0
replies
2.1k
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Answer: A: Differential Peak Calling with Replicates
updated 2.6 years ago by 36k • written 6.6 years ago by 5.8k
0
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0
replies
1.8k
views
Answer: A: Local alternative to galaxy "Extract Genomic DNA using coordinates" tool
updated 2.6 years ago by 36k • written 6.6 years ago by 5.8k
0
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1
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1.6k
views
Answer: A: Help with PScan and user defined matrices
updated 2.6 years ago by 36k • written 6.6 years ago by 5.8k
1
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1
reply
3.1k
views
Answer: A: Why some lines of BAM file do not contain NH tag
updated 2.6 years ago by 36k • written 6.7 years ago by 5.8k
0
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2
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13k
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Comment: C: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 2.6 years ago by 36k • written 6.7 years ago by 5.8k
0
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1
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13k
views
Comment: C: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 2.6 years ago by 36k • written 6.7 years ago by 5.8k
9
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2
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13k
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Answer: A: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 2.6 years ago by 36k • written 6.7 years ago by 5.8k
2
votes
0
replies
3.3k
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Answer: A: Methylation Bisulfite-Sequencing: Bismark, BS seeker, BSMAP, RMAPBS, MAQ
updated 2.6 years ago by 36k • written 6.8 years ago by 5.8k
6
votes
3
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8.4k
views
Ion Torrent Fastq Format Type?
ion-torrent fastq
updated 2.7 years ago by 5.6k • written 10.2 years ago by 5.8k
1
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0
replies
5.6k
views
Answer: A: How to use Samtools to remove reads whose mate does not map as expected
updated 2.7 years ago by 36k • written 8.0 years ago by 5.8k
0
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0
replies
2.2k
views
Answer: A: Paper(S) Discussing Issues In Quality Assessment Of Ngs Data
updated 2.8 years ago by 36k • written 10.3 years ago by 5.8k
1
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0
replies
3.2k
views
Answer: A: Fine Tune Ngs Downstream Analyses Using Genome Mappability ?
updated 2.8 years ago by 36k • written 10.3 years ago by 5.8k
0
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0
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2.2k
views
Answer: A: What Nucleosome Positioning Software Do You Use?
updated 2.8 years ago by 36k • written 10.3 years ago by 5.8k
1
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0
replies
16k
views
Answer: A: Transcription Factor Binding Site Prediction
updated 2.8 years ago by 36k • written 11.3 years ago by 5.8k
1
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1
reply
1.9k
views
Answer: A: Bincons - Does Anyone Know Where One Can Get A Copy?
updated 2.8 years ago by 36k • written 10.4 years ago by 5.8k
1
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0
replies
2.8k
views
Answer: A: How To Convert Flowgram Data To Bases (Sequences)? (Or Flow Index To Base Seque
updated 2.8 years ago by 36k • written 10.4 years ago by 5.8k
0
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0
replies
4.6k
views
Answer: A: How To Convert And Filter Scf Format Into Fasta?
updated 2.8 years ago by 36k • written 10.4 years ago by 5.8k
1
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0
replies
4.5k
views
Answer: A: Maximum Read Depth
updated 2.8 years ago by 36k • written 10.5 years ago by 5.8k
0
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0
replies
4.3k
views
Answer: A: Comparing Gene Expression Profiles Using Z-Scores
updated 2.8 years ago by 36k • written 10.5 years ago by 5.8k
0
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0
replies
2.0k
views
Answer: A: Converting Solid To Srf
updated 2.8 years ago by 36k • written 10.6 years ago by 5.8k
1
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1
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3.2k
views
Answer: A: Extracting Ucsc Canonical Gene Information
updated 2.8 years ago by 36k • written 10.9 years ago by 5.8k
445 results • Page 1 of 9
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