Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
6
votes
5
replies
18k
views
7 follow
How different is rlog transformation from vst transformation in DESeq2
DESeq2 count normalization
updated 9 months ago by 82k • written 5.6 years ago by ▴ 700
1
vote
0
replies
904
views
Comment: Comment: How to find DEG within a cluster between two groups without any replication info
22 months ago by piyushjo ▴ 700
0
votes
1
reply
904
views
Comment: Comment: How to find DEG within a cluster between two groups without any replication info
22 months ago by piyushjo ▴ 700
0
votes
0
replies
655
views
MACS2: broad and broad no-model output peaks are exactly the same. Is something wrong?
ChIP-seq macs2 H3K27ac
22 months ago by piyushjo ▴ 700
0
votes
1
reply
4.8k
views
Answer: A: How to retrieve sets of protein sequences?
updated 3.6 years ago by 43k • written 5.4 years ago by ▴ 700
1
vote
1
reply
1.2k
views
Comment: C: Is Pseudotime analysis most applicable to time-series experiments?
3.9 years ago by piyushjo ▴ 700
0
votes
0
replies
1.1k
views
Comment: C: Advice for a start in Bioinformatics
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
2.6k
views
Answer: A: pre-mRNA GTF reference for 10x
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
2.2k
views
Comment: C: principal component analysis (PCA) of single cell samples which come from differ
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
2.2k
views
Answer: A: principal component analysis (PCA) of single cell samples which come from differ
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
2.4k
views
Comment: C: Compare signatures between scRNA-seq clusters in R
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
682
views
Comment: C: Tophat / output without XS
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
4.3k
views
Comment: C: Recommendation for packages for cell type deconvolution from bulk RNAseq data?
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
2.0k
views
Comment: C: PCA on FPKM data
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
2.2k
views
Comment: C: WGCNA "trait" file format?
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
2.0k
views
Answer: C: PCA on FPKM data
4.0 years ago by piyushjo ▴ 700
0
votes
2
replies
2.2k
views
Comment: C: WGCNA "trait" file format?
4.0 years ago by piyushjo ▴ 700
0
votes
1
reply
2.2k
views
Comment: C: WGCNA "trait" file format?
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
728
views
Comment: C: Classification of long non-coding RNAs
4.0 years ago by piyushjo ▴ 700
2
votes
0
replies
13k
views
Comment: C: Rename Idents in Seurat Object
4.0 years ago by piyushjo ▴ 700
2
votes
0
replies
912
views
Comment: C: Raw Data Requirement for RNA-Seq paper submission
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
3.4k
views
Comment: C: Batch correction in scRNA-seq data via fastMNN | pro/contra
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
3.0k
views
Comment: C: Have we failed as bioinformatician in this time of COVID-19
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
20k
views
Comment: C: ggplot2 labeling and coloring specific Data points in Scatter Plot
4.0 years ago by piyushjo ▴ 700
0
votes
1
reply
2.5k
views
Comment: C: Optimal K-means cluster # for large data (R)
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
2.1k
views
Comment: C: Deseq2 design matrix for multiple factors
4.0 years ago by piyushjo ▴ 700
0
votes
1
reply
2.5k
views
Answer: C: Optimal K-means cluster # for large data (R)
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
940
views
Comment: C: Seurat code availability for published papers
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
935
views
Comment: C: DESeq analysis with different replication
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
951
views
Comment: C: Marker genes of a scRNA-Seq experiment not found in the processed data set gene
4.0 years ago by piyushjo ▴ 700
0
votes
1
reply
951
views
Comment: C: Marker genes of a scRNA-Seq experiment not found in the processed data set gene
4.0 years ago by piyushjo ▴ 700
0
votes
1
reply
1.3k
views
Comment: C: How to best summarize read counts overlapping promoters when read counts are def
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
1.0k
views
Comment: C: How to distinguish malignant vs non-malignant cells based on gene expression dat
4.0 years ago by piyushjo ▴ 700
0
votes
1
reply
1.0k
views
Comment: C: How to distinguish malignant vs non-malignant cells based on gene expression dat
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
1.3k
views
Answer: A: How to map find specific genes in RNA Seq dataset ?
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
1.3k
views
Comment: C: How to map find specific genes in RNA Seq dataset ?
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
1.3k
views
Comment: C: How to map find specific genes in RNA Seq dataset ?
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
1.3k
views
Comment: C: How to map find specific genes in RNA Seq dataset ?
4.0 years ago by piyushjo ▴ 700
8
votes
3
replies
3.9k
views
How to make an intronic GTF for alignment
RNA-Seq intronic-gtf
updated 10 months ago by 43k • written 4.0 years ago by ▴ 700
0
votes
0
replies
3.9k
views
Comment: C: How to make an intronic GTF for alignment
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
621
views
Comment: C: Cannot find a gene in the counts table
4.0 years ago by piyushjo ▴ 700
2
votes
0
replies
21k
views
Comment: C: Subsetting - Raw Counts from Seurat Object
4.0 years ago by piyushjo ▴ 700
0
votes
1
reply
21k
views
Comment: C: Subsetting - Raw Counts from Seurat Object
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
2.3k
views
Comment: C: STAR genome index Error
4.1 years ago by piyushjo ▴ 700
0
votes
1
reply
2.3k
views
Comment: C: STAR genome index Error
4.1 years ago by piyushjo ▴ 700
0
votes
1
reply
2.3k
views
Comment: C: STAR genome index Error
4.1 years ago by piyushjo ▴ 700
0
votes
0
replies
7.4k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
4.1 years ago by piyushjo ▴ 700
1
vote
0
replies
7.4k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
4.1 years ago by piyushjo ▴ 700
0
votes
1
reply
7.4k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
4.1 years ago by piyushjo ▴ 700
2
votes
0
replies
1.3k
views
Comment: C: Consensus WGCNA: soft-threshold power selection
4.1 years ago by piyushjo ▴ 700
147 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6